Publications from the Center Data Science Shared Resource in conjunction with Cancer
Center members.
Published
Dualeh SHA, Anderson MS, Abrahamse P, Kamdar N, Evans E, Suwanabol PA., Trends in
End-of-Life Care and Satisfaction Among Veterans Undergoing Surgery, Ann Surg, Ann
Surg. 2024 Feb 23. doi: 10.1097/SLA.0000000000006253. Online ahead of print., PMID:
38390769, PMCID: , 10.1097/SLA.0000000000006253
Katz SJ, Abrahamse P, Furgal A, Hodan R, Tocco RS, Ward KC, Hamilton AS, Wallner LP,
Kurian AW., Genetic Counseling, Testing, and Family Communication Into Survivorship
After Diagnosis of Breast Cancer, J Clin Oncol, J Clin Oncol. 2024 Jul 15:JCO2400122.
doi: 10.1200/JCO.24.00122. Online ahead of print., PMID: 39008790, PMCID: , 10.1200/JCO.24.00122
Malgulwar PB, Danussi C, Dharmaiah S, Johnson W, Singh A, Rai K, Rao A, Huse JT.,
Sirtuin 2 inhibition modulates chromatin landscapes genome-wide to induce senescence
in ATRX-deficient malignant glioma, Neuro Oncol, Neuro Oncol. 2024 Jan 5;26(1):55-67.
doi: 10.1093/neuonc/noad155., PMID: 37625115, PMCID: PMC10769000, 10.1093/neuonc/noad155
Al Turkestani N, Li T, Bianchi J, Gurgel M, Prieto J, Shah H, Benavides E, Soki F,
Mishina Y, Fontana M, Rao A, Zhu H, Cevidanes L., A comprehensive patient-specific
prediction model for temporomandibular joint osteoarthritis progression, Proc Natl
Acad Sci U S A, Proc Natl Acad Sci U S A. 2024 Feb 20;121(8):e2306132121. doi: 10.1073/pnas.2306132121.
Epub 2024 Feb 12., PMID: 38346188, PMCID: PMC10895339, 10.1073/pnas.2306132121
Donahue KL, Watkoske HR, Kadiyala P, Du W, Brown K, Scales MK, Elhossiny AM, Espinoza
CE, Lasse Opsahl EL, Griffith BD, Wen Y, Sun L, Velez-Delgado A, Renollet NM, Morales
J, Nedzesky NM, Baliira RK, Menjivar RE, Medina-Cabrera PI, Rao A, Allen B, Shi J,
Frankel TL, Carpenter ES, Bednar F, Zhang Y, Pasca di Magliano M., Oncogenic KRAS-dependent
stromal interleukin-33 directs the pancreatic microenvironment to promote tumor growth,
Cancer Discov, Cancer Discov. 2024 Jul 3. doi: 10.1158/2159-8290.CD-24-0100. Online
ahead of print., PMID: 38958646, PMCID: , 10.1158/2159-8290.CD-24-0100
Zakharia Y, Singer EA, Acharyya S, Garje R, Joshi M, Peace D, Baladandayuthapani V,
Majumdar A, Li X, Lalancette C, Kryczek I, Zou W, Alva A., Durvalumab and guadecitabine
in advanced clear cell renal cell carcinoma: results from the phase Ib/II study BTCRC-GU16-043,
Nat Commun, Nat Commun. 2024 Feb 1;15(1):972. doi: 10.1038/s41467-024-45216-z., PMID:
38302476, PMCID: PMC10834488, 10.1038/s41467-024-45216-z
Whitehead CE, Ziemke EK, Frankowski-McGregor CL, Mumby RA, Chung J, Li J, Osher N,
Coker O, Baladandayuthapani V, Kopetz S, Sebolt-Leopold JS., A first-in-class selective
inhibitor of EGFR and PI3K offers a single-molecule approach to targeting adaptive
resistance, Nat Cancer, Nat Cancer. 2024 Jul 11. doi: 10.1038/s43018-024-00781-6.
Online ahead of print., PMID: 38992135, PMCID: , 10.1038/s43018-024-00781-6
Nguyen CB, Reimers MA, Perera C, Abida W, Chou J, Feng FY, Antonarakis ES, McKay RR,
Pachynski RK, Zhang J, Reichert ZR, Palmbos PL, Caram MEV, Vaishampayan UN, Heath
EI, Hopkins AC, Cieslik MP, Wu YM, Robinson D, Baladandayuthapani V, Chinnaiyan AM,
Alva AS., Evaluating Immune Checkpoint Blockade in Metastatic Castration-Resistant
Prostate Cancers with Deleterious CDK12 Alterations in the Phase 2 IMPACT Trial, Clin
Cancer Res, Clin Cancer Res. 2024 May 24. doi: 10.1158/1078-0432.CCR-24-0400. Online
ahead of print., PMID: 38787530, PMCID: , 10.1158/1078-0432.CCR-24-0400
Werho DK, Fisk A, Yeh J, Rooney S, Wilkes R, Shin AY, Zhang W, Banerjee M, Gaies M.,
Measuring Critical Care Unit Performance Using a Postoperative Mechanical Ventilation
Quality Metric, Ann Thorac Surg, Ann Thorac Surg. 2024 Feb;117(2):440-447. doi: 10.1016/j.athoracsur.2022.11.026.
Epub 2022 Dec 5., PMID: 36470563, PMCID: , 10.1016/j.athoracsur.2022.11.026
Peng DM, Kwiatkowski DM, Lasa JJ, Zhang W, Banerjee M, Mikesell K, Joong A, Dykes
JC, Tume SC, Niebler RA, Teele SA, Klugman D, Gaies MG, Schumacher KR., Contemporary
Care and Outcomes of Critically-ill Children With Clinically Diagnosed Myocarditis,
J Card Fail, J Card Fail. 2024 Feb;30(2):350-358. doi: 10.1016/j.cardfail.2023.04.010.
Epub 2023 May 6., PMID: 37150502, PMCID: , 10.1016/j.cardfail.2023.04.010
Bynum JPW, Montoya A, Lawton EJ, Gibbons JB, Banerjee M, Meddings J, Norton EC., Accountable
Care Organization Attribution and Post-Acute Skilled Nursing Facility Outcomes for
People Living With Dementia, J Am Med Dir Assoc, J Am Med Dir Assoc. 2024 Jan;25(1):53-57.e2.
doi: 10.1016/j.jamda.2023.10.031. Epub 2023 Dec 8., PMID: 38081322, PMCID: , 10.1016/j.jamda.2023.10.031
Vasbinder A, Catalan T, Anderson E, Chu C, Kotzin M, Murphy D, Cheplowitz H, Diaz
KM, Bitterman B, Pizzo I, Huang Y, Xie J, Hoeger CW, Kaakati R, Berlin HP, Shadid
H, Perry D, Pan M, Takiar R, Padalia K, Mills J, Meloche C, Bardwell A, Rochlen M,
Blakely P, Leja M, Banerjee M, Riwes M, Magenau J, Anand S, Ghosh M, Pawarode A, Yanik
G, Nathan S, Maciejewski J, Okwuosa T, Hayek SS., Cardiovascular Risk Stratification
of Patients Undergoing Hematopoietic Stem Cell Transplantation: The CARE-BMT Risk
Score, J Am Heart Assoc, J Am Heart Assoc. 2024 Jan 2;13(1):e033599. doi: 10.1161/JAHA.123.033599.
Epub 2023 Dec 29., PMID: 38158222, PMCID: PMC10863830, 10.1161/JAHA.123.033599
Vasbinder A, Padalia K, Pizzo I, Machado K, Catalan T, Presswalla F, Anderson E, Ismail
A, Hutten C, Huang Y, Blakely P, Azam TU, Berlin H, Feroze R, Launius C, Meloche C,
Michaud E, O'Hayer P, Pan M, Shadid HR, Rasmussen LJH, Roberts DA, Zhao L, Banerjee
M, Murthy V, Loosen SH, Chalkias A, Tacke F, Reiser J, Giamarellos-Bourboulis EJ,
Eugen-Olsen J, Pop-Busui R, Hayek SS; ISIC investigators., SuPAR, biomarkers of inflammation,
and severe outcomes in patients hospitalized for COVID-19: The International Study
of Inflammation in COVID-19, J Med Virol, J Med Virol. 2024 Jan;96(1):e29389. doi:
10.1002/jmv.29389., PMID: 38235904, PMCID: PMC10829525, 10.1002/jmv.29389
Schmidt BM, Huang Y, Banerjee M, Hayek SS, Pop-Busui R., Residential Address Amplifies
Health Disparities and Risk of Infection in Individuals With Diabetic Foot Ulcers,
Diabetes Care, Diabetes Care. 2024 Mar 1;47(3):508-515. doi: 10.2337/dc23-1787., PMID:
38241187, PMCID: PMC10909679, 10.2337/dc23-1787
Chalkias A, Huang Y, Ismail A, Pantazopoulos I, Papagiannakis N, Bitterman B, Anderson
E, Catalan T, Erne GK, Tilley CR, Alaka A, Amadi KM, Presswalla F, Blakely P, Bernal-Morell
E, Cebreiros López I, Eugen-Olsen J, García de Guadiana Romualdo L, Giamarellos-Bourboulis
EJ, Loosen SH, Reiser J, Tacke F, Skoulakis A, Laou E, Banerjee M, Pop-Busui R, Hayek
SS; International Study of Inflammation in COVID-19 (ISIC) Investigator Group., Intubation
Decision Based on Illness Severity and Mortality in COVID-19: An International Study,
Crit Care Med, Crit Care Med. 2024 Jun 1;52(6):930-941. doi: 10.1097/CCM.0000000000006229.
Epub 2024 Feb 23., PMID: 38391282, PMCID: , 10.1097/CCM.0000000000006229
Kim ME, Baskar S, Janson CM, Chandler SF, Whitehill RD, Dionne A, Law MA, Domnina
Y, Smith-Parrish MN, Bird GL, Banerjee M, Zhang W, Reichle G, Schumacher KR, Czosek
RJ, Morales DLS, Alten JA., Epidemiology of Postoperative Junctional Ectopic Tachycardia
in Infants Undergoing Cardiac Surgery, Ann Thorac Surg, Ann Thorac Surg. 2024 Jun;117(6):1178-1185.
doi: 10.1016/j.athoracsur.2024.03.002. Epub 2024 Mar 12., PMID: 38484909, PMCID: ,
10.1016/j.athoracsur.2024.03.002
Vasbinder A, Anderson E, Catalan T, Ismail A, Banerjee M, Pizzo I, Machado K, Blakely
P, Salem JE, Hayek SS., Incidence of Immune Checkpoint Inhibitor-Induced Myocarditis
During the COVID-19 Pandemic, J Am Heart Assoc, J Am Heart Assoc. 2024 Mar 19;13(6):e032667.
doi: 10.1161/JAHA.123.032667. Epub 2024 Mar 18., PMID: 38497479, PMCID: PMC11010026,
10.1161/JAHA.123.032667
Perry T, Rosenthal DN, Lorts A, Zafar F, Zhang W, VanderPluym C, Dewitt AG, Reichle
G, Banerjee M, Schumacher KR., Mechanical Ventilation and Outcomes of Children Who
Undergo Ventricular Assist Device Placement: 2014-2020 Linked Analysis From the Advanced
Cardiac Therapies Improving Outcomes Network and Pediatric Cardiac Critical Care Consortium
Registries, Pediatr Crit Care Med, Pediatr Crit Care Med. 2024 Jul 1;25(7):e318-e327.
doi: 10.1097/PCC.0000000000003520. Epub 2024 Apr 15., PMID: 38619330, PMCID: , 10.1097/PCC.0000000000003520
Hutten CG, Padalia K, Vasbinder A, Huang Y, Ismail A, Pizzo I, Machado Diaz K, Catalan
T, Presswalla F, Anderson E, Erne G, Bitterman B, Blakely P, Giamarellos-Bourboulis
EJ, Loosen SH, Tacke F, Chalkias A, Reiser J, Eugen-Olsen J, Banerjee M, Pop-Busui
R, Hayek SS., Obesity, Inflammation, and Clinical Outcomes in COVID-19: A Multicenter
Prospective Cohort Study, J Clin Endocrinol Metab, J Clin Endocrinol Metab. 2024 Apr
18:dgae273. doi: 10.1210/clinem/dgae273. Online ahead of print., PMID: 38635301, PMCID:
, 10.1210/clinem/dgae273
Elafros MA, Brown A, Marcus H, Dawood T, Bachuwa GI, Banerjee M, Winch PJ, Kvalsund
M, Feldman EL, Skolarus LE, Callaghan BC., Prevalence and Risk Factors of Distal Symmetric
Polyneuropathy Among Predominantly Non-Hispanic Black, Low-Income Patients, Neurology,
Neurology. 2024 Jun;102(11):e209390. doi: 10.1212/WNL.0000000000209390. Epub 2024
May 8., PMID: 38718313, PMCID: PMC11175633, 10.1212/WNL.0000000000209390
Chen DW, Carr G, Worden FP, Veenstra CM, Haymart MR, Banerjee M., Survival Prognostication
in Patients with Differentiated Thyroid Cancer and Distant Metastases: A SEER Population-Based
Study, Thyroid, Thyroid. 2024 Jul;34(7):837-845. doi: 10.1089/thy.2023.0709. Epub
2024 Jul 1., PMID: 38757633, PMCID: , 10.1089/thy.2023.0709
Chen DW, Banerjee M, Gay B, Wang YC, Miranda L, Watanabe M, Veenstra CM, Haymart MR.,
Access to New Clinic Appointments for Patients With Cancer, JAMA Netw Open, JAMA Netw
Open. 2024 Jun 3;7(6):e2415587. doi: 10.1001/jamanetworkopen.2024.15587., PMID: 38848062,
PMCID: PMC11161839, 10.1001/jamanetworkopen.2024.15587
De Lott LB, Brennan B, Wallace B, Kerber K, Burke JF, Roslin C, Terman S, Andrews
C, Waljee AK, Banerjee M., Are adverse events higher among patients with acute optic
neuritis prescribed glucocorticoids? A retrospective, longitudinal cohort study, BMJ
Open, BMJ Open. 2024 Jul 11;14(7):e076801. doi: 10.1136/bmjopen-2023-076801., PMID:
38991687, PMCID: PMC11243139, 10.1136/bmjopen-2023-076801
Watanabe M, Reynolds EL, Banerjee M, Charles M, Mizokami-Stout K, Albright D, Ang
L, Lee JM, Pop-Busui R, Feldman EL, Callaghan BC., Bidirectional Associations Between
Mental Health Disorders and Chronic Diabetic Complications in Individuals With Type
1 or Type 2 Diabetes, Diabetes Care, Diabetes Care. 2024 Jul 15:dc240818. doi: 10.2337/dc24-0818.
Online ahead of print., PMID: 39008530, PMCID: , 10.2337/dc24-0818
Bareille P, Forth R, Imber V, Bondarenko I, Michaud A, Majorek-Olechowska B., Once-Daily
Fluticasone Furoate/Vilanterol Versus Once-Daily Fluticasone Furoate in Asthma Patients
Aged 5-17 Years, Ann Allergy Asthma Immunol, Ann Allergy Asthma Immunol. 2024 Jun
25:S1081-1206(24)00376-4. doi: 10.1016/j.anai.2024.06.024. Online ahead of print.,
PMID: 38936466, PMCID: , 10.1016/j.anai.2024.06.024
Foucar CE, Foley DH, Aldous J, Burke PW, Pettit KR, Benitez LL, Perissinotti AJ, Marini
BL, Boonstra P, Bixby DL., Real-world outcomes with immunosuppressive therapy for
aplastic anemia in patients treated at the University of Michigan, Eur J Haematol,
Eur J Haematol. 2024 Mar;112(3):424-432. doi: 10.1111/ejh.14131. Epub 2023 Nov 6.,
PMID: 37929654, PMCID: , 10.1111/ejh.14131
Strohbehn GW, Stadler WM, Boonstra PS, Ratain MJ., Optimizing the doses of cancer
drugs after usual dose finding, Clin Trials, Clin Trials. 2024 Jun;21(3):340-349.
doi: 10.1177/17407745231213882. Epub 2023 Dec 27., PMID: 38148731, 10.1177/17407745231213882
Tonna JE, Boonstra PS, MacLaren G, Paden M, Brodie D, Anders M, Hoskote A, Ramanathan
K, Hyslop R, Fanning JJ, Rycus P, Stead C, Barrett NA, Mueller T, Gómez RD, Malhotra
Kapoor P, Fraser JF, Bartlett RH, Alexander PMA, Barbaro RP; Extracorporeal Life Support
Organization (ELSO) Member Centers Group., Extracorporeal Life Support Organization
Registry International Report 2022: 100,000 Survivors, ASAIO J, ASAIO J. 2024 Feb
1;70(2):131-143. doi: 10.1097/MAT.0000000000002128. Epub 2024 Jan 5., PMID: 38181413,
PMCID: PMC10962646, 10.1097/MAT.0000000000002128
Boonstra PS, Owen DR, Kang J., Shrinkage priors for isotonic probability vectors and
binary data modeling, with applications to dose-response modeling, Pharm Stat, Pharm
Stat. 2024 Jul-Aug;23(4):540-556. doi: 10.1002/pst.2372. Epub 2024 Feb 23., PMID:
38400582, PMCID: , 10.1002/pst.2372
Ellis KR, Furgal A, Wayas F, Contreras A, Jones C, Perez S, Raji D, Smith M, Vincent
C, Song L, Northouse L, Langford AT., Symptom burden and quality of life among patient
and family caregiver dyads in advanced cancer, Qual Life Res, Qual Life Res. 2024
Jul 24. doi: 10.1007/s11136-024-03743-8. Online ahead of print., PMID: 39046614, PMCID:
, 10.1007/s11136-024-03743-8
D Bhaumik 1, E Salzman 1, E Davis 1, F Blostein 1, G Li 2, K Neiswanger 3, R J Weyant
4, R Crout 5, D W McNeil 6, M L Marazita 7, B Foxman 1, Plaque Microbiome in Caries-Active
and Caries-Free Teeth by Dentition, JDR Clin Trans Res, JDR Clin Trans Res 2024 Jan;9(1):61-71.
doi: 10.1177/23800844221121260. Epub 2022 Sep 25, PMID: 36154330, PMCID: PMC10725180,
10.1177/23800844221121260
Opron K, Begley LA, Erb-Downward JR, Li G, Alexis NE, Barjaktarevic I, Barr RG, Bleecker
ER, Boucher R, Bowler RP, Christenson SA, Comellas AP, Criner G, Cooper CB, Couper
D, Galban CJ, Han MK, Hastie A, Hatt C, Hoffman EA, Kaner RJ, Kesimer M, Krishnan
JA, LaFon DC, Martinez FJ, Ortega VE, Peters SP, Paine R 3rd, Putcha N, Woodruff PG,
Huffnagle GB, Kozik AJ, Curtis JL, Huang YJ; SPIROMICS Investigators., Loss of Airway
Phylogenetic Diversity Is Associated with Clinical and Pathobiological Markers of
Disease Development in Chronic Obstructive Pulmonary Disease, Am J Respir Crit Care
Med, Am J Respir Crit Care Med. 2024 Jul 15;210(2):186-200. doi: 10.1164/rccm.202303-0489OC.,
PMID: 38261629, PMCID: PMC11273318, 10.1164/rccm.202303-0489OC
Fang Z, Li G, Li W, Pu X, Xiang D., Distributed eQTL analysis with auxiliary information,
J Stat Plan Inference, . 2024 Jan;9(1):61-71. doi: 10.1177/23800844221121260. Epub
2022 Sep 25, PMID: 38264292, PMCID: PMC10805471, 10.1016/j.jspi.2023.06.003
Flora C, Olesnavich M, Zuo Y, Sandford E, Madhukar R, Rozwadowski M, Sugur K, Ly A,
Canbaz AA, Shedeck A, Li G, Geer MJ, Yanik GA, Ghosh M, Frame DG, Bonifant CL, Jain
T, Knight JS, Choi SW, Tewari M., Longitudinal plasma proteomics in CAR T-cell therapy
patients implicates neutrophils and NETosis in the genesis of CRS, Blood Adv, Blood
Adv. 2024 Mar 26;8(6):1422-1426. doi: 10.1182/bloodadvances.2023010728., PMID: 38266157,
PMCID: PMC10950819, 10.1182/bloodadvances.2023010728
Chan LS, Li G., Zero is not absence: censoring-based differential abundance analysis
for microbiome data, Bioinformatics, Bioinformatics. 2024 Feb 1;40(2):btae071. doi:
10.1093/bioinformatics/btae071., PMID: 38331411PMC10885211, 10.1093/bioinformatics/btae071
Li G, Wang M., Simultaneous clustering and estimation of networks in multiple graphical
models, Biostatistics, Biostatistics. 2024 Jun 5:kxae015. doi: 10.1093/biostatistics/kxae015.
Online ahead of print., PMID: 388418720, 10.1093/biostatistics/kxae015
Herr DJ, Moncion A, Griffith KA, Marsh R, Grubb M, Bhatt A, Dominello M, Walker EM,
Narayana V, Abu-Isa E, Vicini FA, Hayman JA, Pierce LJ; Michigan Radiation Oncology
Quality Consortium., Factors Associated With Cardiac Radiation Dose Reduction After
Hypofractionated Radiation Therapy for Localized, Left-Sided Breast Cancer in a Large
Statewide Quality Consortium, Int J Radiat Oncol Biol Phys, Int J Radiat Oncol Biol
Phys. 2024 Mar 1;118(3):632-638. doi: 10.1016/j.ijrobp.2023.09.013. Epub 2023 Oct
3., PMID: 37797748, 10.1016/j.ijrobp.2023.09.013
Jagsi R, Griffith KA, Harris EE, Wright JL, Recht A, Taghian AG, Lee L, Moran MS,
Small W Jr, Johnstone C, Rahimi A, Freedman G, Muzaffar M, Haffty B, Horst K, Powell
SN, Sharp J, Sabel M, Schott A, El-Tamer M., Omission of Radiotherapy After Breast-Conserving
Surgery for Women With Breast Cancer With Low Clinical and Genomic Risk: 5-Year Outcomes
of IDEA, J Clin Oncol, J Clin Oncol. 2024 Feb 1;42(4):390-398. doi: 10.1200/JCO.23.02270.
Epub 2023 Dec 7., PMID: 38060195, PMCID: , 10.1200/JCO.23.02270
Cutter CM, Griffith KA, Settles IH, Stewart AJ, Kerr EA, Feldman EL, Jagsi R., Gender
Differences in Faculty Perceptions of Mentorship and Sponsorship, JAMA Netw Open,
JAMA Netw Open. 2024 Feb 5;7(2):e2355663. doi: 10.1001/jamanetworkopen.2023.55663.,
PMID: 38345823PMC10862153, 10.1001/jamanetworkopen.2023.55663
Beydoun H, Griffith KA, Jagsi R, Burmeister JW, Moran JM, Vicini FA, Hayman JA, Paximadis
P, Boike TP, Walker EM, Pierce LJ, Dominello MM., Are We Missing Acute Toxicities
Associated With Hypofractionated Breast Irradiation? A Report From a Large Multicenter
Cohort Study, Int J Radiat Oncol Biol Phys, Int J Radiat Oncol Biol Phys. 2024 Jul
15;119(4):1092-1098. doi: 10.1016/j.ijrobp.2024.01.225. Epub 2024 Feb 15., PMID: 38364950,
PMCID: , 10.1016/j.ijrobp.2024.01.225
Jacobson CE, Griffith KA, Krenz C, Jones RD, Cutter CM, Singer K, Paradis KC, Stewart
AJ, Feldman EL, Settles IH, Kerr EA, Ubel PA, Spector ND, Jagsi R., The Disproportionate
Effects of the COVID-19 Pandemic on the Time Allocation of Recipients of NIH Career
Development Awards Who Are Women or Caregivers of Dependents, Acad Med, Acad Med.
2024 Mar 7. doi: 10.1097/ACM.0000000000005681. Online ahead of print., PMID: 38452218,
PMCID: , 10.1097/ACM.0000000000005681
Jagsi R, Griffith KA, Harris EE, Wright JL, Recht A, Taghian AG, Lee L, Moran MS,
Small W Jr, Johnstone C, Rahimi A, Freedman G, Muzaffar M, Haffty B, Horst K, Powell
SN, Sharp J, Sabel M, Schott A, El-Tamer M., Reply to G.B. Mann et al and S. Sorscher,
J Clin Oncol, J Clin Oncol. 2024 Jun 1;42(16):1998-2000. doi: 10.1200/JCO.24.00224.
Epub 2024 Mar 15., PMID: 38489573, 10.1200/JCO.24.00224
Perumalswami CR, Greene AK, Griffith KA, Jagsi R., National science foundation grant
awardees' perspectives on Article X and sexual harassment in science, PLoS One, PLoS
One. 2024 Apr 30;19(4):e0300762. doi: 10.1371/journal.pone.0300762. eCollection 2024.,
PMID: 38687758, PMCID: PMC11060523, 10.1371/journal.pone.0300762
Paradis KC, Kerr EA, Griffith KA, Cutter CM, Feldman EL, Singer K, Spector ND, Ubel
PA, Jagsi R., Burnout Among Mid-Career Academic Medical Faculty, JAMA Netw Open, JAMA
Netw Open. 2024 Jun 3;7(6):e2415593. doi: 10.1001/jamanetworkopen.2024.15593., PMID:
38857049, PMCID: PMC11165383, 10.1001/jamanetworkopen.2024.15593
Jagsi R, Griffith KA, Paradis KC, Santos PMG, Torres MA, Jones RD, Kerr EA., Midcareer
Satisfaction and Likelihood of Leaving Current Position of Former Career Development
Awardees, JAMA, JAMA. 2024 Jul 29. doi: 10.1001/jama.2024.12262. Online ahead of print.,
PMID: 39073801, PMCID: , 10.1001/jama.2024.12262
Olney KB, Pai MP, Thomas JK, Burgess DR, Olney WJ, Bruning RA, Griffith KA, Casaus
DV, Crance E, Porterfield JZ, Burgess DS., Fixed dose daptomycin: An opportunity for
pharmacokinetic/pharmacodynamic optimization in Staphylococcus aureus infections,
Pharmacotherapy, Pharmacotherapy. 2024 Jul 30. doi: 10.1002/phar.4602. Online ahead
of print., PMID: 39078247, PMCID: , 10.1002/phar.4602
Zengin ZB, Henderson NC, Park JJ, Ali A, Nguyen C, Hwang C, Barata PC, Bilen MA, Graham
L, Mo G, Kilari D, Tripathi A, Labriola M, Rothstein S, Garje R, Koshkin VS, Patel
VG, Schweizer MT, Armstrong AJ, McKay RR, Alva A, Dorff T., Clinical implications
of AR alterations in advanced prostate cancer: a multi-institutional collaboration,
Prostate Cancer Prostatic Dis, Prostate Cancer Prostatic Dis. 2024 Feb 22. doi: 10.1038/s41391-024-00805-3.
Online ahead of print., PMID: 38383885, PMCID: , 10.1038/s41391-024-00805-3
Henderson NC, Nam K, Feng D., Nonparametric analysis of delayed treatment effects
using single-crossing constraints, Biom J, Biom J. 2024 Mar;66(2):e2200165. doi: 10.1002/bimj.202200165.,
PMID: 38403463, 10.1002/bimj.202200165
Kim DeLuca E, Dalziel K, Wittenberg E, Henderson NC, Prosser LA., Selecting PedsQL
items to derive the PedsUtil health state classification system to measure health
utilities in children, Health Qual Life Outcomes, Health Qual Life Outcomes. 2024
Jul 10;22(1):53. doi: 10.1186/s12955-024-02268-5., PMID: 38987772PMC11238509, 10.1186/s12955-024-02268-5
Kim C, Lane A, Vu TT, Lewis CB, Yin Z, Jiang H, Auchus RJ, Schreiner PJ., Prospective
early adulthood risk factors for vasomotor symptoms in the Coronary Artery Risk Development
in Young Adults study, Menopause, Menopause. 2024 Feb 1;31(2):108-115. doi: 10.1097/GME.0000000000002306.,
PMID: 38270902, PMCID: PMC10827353, 10.1097/GME.0000000000002306
Ludwig M, Birkeland A, Smith J, Gensterblum-Miller E, Zhai J, Kulkarni A, Jiang H,
Brenner C., A Genome Wide CRISPR Profiling Approach Identifies Mechanisms of Cisplatin
Resistance in Head and Neck Squamous Cell Carcinoma, Res Sq, Res Sq [Preprint]. 2024
Feb 20:rs.3.rs-3922565. doi: 10.21203/rs.3.rs-3922565/v1., PMID: 38464196, PMCID:
PMC10925415, 10.21203/rs.3.rs-3922565/v1
Hill BD, Zak AJ, Raja S, Bugada LF, Rizvi SM, Roslan SB, Nguyen HN, Chen J, Jiang
H, Ono A, Goldstein DR, Wen F., iGATE analysis improves the interpretability of single-cell
immune landscape of influenza infection, JCI Insight, JCI Insight. 2024 May 30;9(12):e172140.
doi: 10.1172/jci.insight.172140., PMID: 38814732, 10.1172/jci.insight.172140
McShane A, Narayanan IV, Paulsen MT, Ashaka M, Blinkiewicz H, Yang NT, Magnuson B,
Bedi K, Wilson TE, Ljungman M., Characterizing nascent transcription patterns of PROMPTs,
eRNAs, and readthrough transcripts in the ENCODE4 deeply profiled cell lines, bioRxiv,
bioRxiv [Preprint]. 2024 May 3:2024.04.09.588612. doi: 10.1101/2024.04.09.588612.,
PMID: 38645116, PMCID: PMC11030308, 10.1101/2024.04.09.588612
Bedi K, Magnuson B, Narayanan IV, McShane A, Ashaka M, Paulsen MT, Wilson TE, Ljungman
M., Isoform and pathway-specific regulation of post-transcriptional RNA processing
in human cells, bioRxiv, bioRxiv [Preprint]. 2024 Jun 12:2024.06.12.598705. doi: 10.1101/2024.06.12.598705.,
PMID: 38915566, PMCID: PMC11195214, 10.1101/2024.06.12.598705
Lavrova A, Mishra S, Richardson J, Masotti M, Kurokawa R, Kurokawa M, Itriago-Leon
P, Gulani V, McCracken B, Wright K, Hussain HK, Moritani T, Seiberlich N., Quality
assessment of routine brain imaging at 0.55 T: initial experience in a clinical workflow,
NMR Biomed, NMR Biomed. 2024 Jul;37(7):e5017. doi: 10.1002/nbm.5017. Epub 2023 Aug
31., PMID: 37654047, PMCID: , 10.1002/nbm.5017
Siems CB, Ji Z, Jedeon Z, Schultz J, Teigen L, Allen T, John R, Estep JD, Masotti
M, Alexy T, Kamdar F, Maharaj V, Pritzker M, Garry D, Shaffer A, Cogswell R., Validation
of the Minnesota Pectoralis Risk Score to predict mortality in the HeartMate 3 population,
J Heart Lung Transplant, J Heart Lung Transplant. 2024 Apr;43(4):539-546. doi: 10.1016/j.healun.2023.11.003.
Epub 2023 Nov 11., PMID: 37956881, 10.1016/j.healun.2023.11.003
Shnayder-Adams MM, Masotti M, Sanogo ML., Clinical Outcomes after Median Arcuate Ligament
Release in Patients Responsive to Celiac Plexus Block, J Vasc Interv Radiol, J Vasc
Interv Radiol. 2024 Apr;35(4):558-562. doi: 10.1016/j.jvir.2023.12.569. Epub 2024
Jan 3., PMID: 38181971, PMCID: , 10.1016/j.jvir.2023.12.569
Ramachandran A, Hussain HK, Gulani V, Kelsey L, Mendiratta-Lala M, Richardson J, Masotti
M, Dudek N, Morehouse J, Panagis KR, Wright K, Seiberlich N., Abdominal MRI on a Commercial
0.55T System: Initial Evaluation and Comparison to Higher Field Strengths, Acad Radiol,
Acad Radiol. 2024 Feb 5:S1076-6332(24)00018-7. doi: 10.1016/j.acra.2024.01.018. Online
ahead of print., PMID: 38320946, PMCID: , 10.1016/j.acra.2024.01.018
Gaur S, Stein EB, Schneider DK, Masotti M, Davenport MS, George AK, Ellis JH., Gold
nanoshells for prostate cancer treatment: evidence for deposition in abdominal organs,
Abdom Radiol (NY), Abdom Radiol (NY). 2024 Jun;49(6):1929-1939. doi: 10.1007/s00261-024-04184-0.
Epub 2024 Feb 20., PMID: 38376575, PMCID: , 10.1007/s00261-024-04184-0
Lavrova A, Seiberlich N, Kelsey L, Richardson J, Comer J, Masotti M, Itriago-Leon
P, Wright K, Mishra S., Comparison of image quality and diagnostic efficacy of routine
clinical lumbar spine imaging at 0.55T and 1.5/3T, Eur J Radiol, Eur J Radiol. 2024
Jun;175:111406. doi: 10.1016/j.ejrad.2024.111406. Epub 2024 Mar 5., PMID: 38490129,
PMCID: , 10.1016/j.ejrad.2024.111406
O'Donohue LS, Friedland MH, Shankar PR, Gonzalez-Cabezas C, Flannagan SE, Aronovich
S, Masotti M, Bornschein RE, Davenport MS., Direct Quantification of Gadolinium Retention
in Young Patients by ICP-MS Analysis of Extracted Teeth, AJR Am J Roentgenol, AJR
Am J Roentgenol. 2024 Jun;222(6):e2430927. doi: 10.2214/AJR.24.30927. Epub 2024 Mar
20., PMID: 38506538, 10.2214/AJR.24.30927
Goutman SA, Boss J, Jang DG, Mukherjee B, Richardson RJ, Batterman S, Feldman EL.,
Environmental risk scores of persistent organic pollutants associate with higher ALS
risk and shorter survival in a new Michigan case/control cohort, J Neurol Neurosurg
Psychiatry, J Neurol Neurosurg Psychiatry. 2024 Feb 14;95(3):241-248. doi: 10.1136/jnnp-2023-332121.,
PMID: 37758454PMC11060633, 10.1136/jnnp-2023-332121
Howard RA, Thelen AE, Chen X, Gates R, Krumm AE, Millis MA, Gupta T, Brown CS, Bandeh-Ahmadi
H, Wnuk GM, Yee CC, Ryan AM, Mukherjee B, Dimick JB, George BC., Mortality and Severe
Complications Among Newly Graduated Surgeons in the United States, Ann Surg, Ann Surg.
2024 Apr 1;279(4):555-560. doi: 10.1097/SLA.0000000000006128. Epub 2023 Oct 13., PMID:
37830271, PMCID: PMC10939969, 10.1097/SLA.0000000000006128
Goutman SA, Boss J, Jang DG, Piecuch C, Farid H, Batra M, Mukherjee B, Feldman EL,
Batterman SA., Avocational exposure associations with ALS risk, survival, and phenotype:
A Michigan-based case-control study, J Neurol Sci, J Neurol Sci. 2024 Feb 15;457:122899.
doi: 10.1016/j.jns.2024.122899. Epub 2024 Jan 23., PMID: 38278093, PMCID: PMC11060628,
10.1016/j.jns.2024.122899
Zhuang Y, Kim NY, Fritsche LG, Mukherjee B, Lee S., Incorporating functional annotation
with bilevel continuous shrinkage for polygenic risk prediction, BMC Bioinformatics,
BMC Bioinformatics. 2024 Feb 9;25(1):65. doi: 10.1186/s12859-024-05664-2., PMID: 38336614,
PMCID: , 10.1186/s12859-024-05664-2
Salvatore M, Kundu R, Shi X, Friese CR, Lee S, Fritsche LG, Mondul AM, Hanauer D,
Pearce CL, Mukherjee B., To weight or not to weight? Studying the effect of selection
bias in three large EHR-linked biobanks, medRxiv, medRxiv [Preprint]. 2024 Feb 13:2024.02.12.24302710.
doi: 10.1101/2024.02.12.24302710., PMID: 38405832PMC10888982, 10.1101/2024.02.12.24302710
Jang DG, Dou J, Koubek EJ, Teener S, Zhao L, Bakulski KM, Mukherjee B, Batterman SA,
Feldman EL, Goutman SA., Metal mixtures associate with higher amyotrophic lateral
sclerosis risk and mortality independent of genetic risk and correlate to self-reported
exposures: a case-control study, medRxiv, medRxiv [Preprint]. 2024 Feb 28:2024.02.27.24303143.
doi: 10.1101/2024.02.27.24303143., PMID: 38464233PMC10925361, 10.1101/2024.02.27.24303143
Hao W, Cathey AL, Aung MM, Boss J, Meeker JD, Mukherjee B., Statistical methods for
chemical mixtures: a roadmap for practitioners, medRxiv, medRxiv [Preprint]. 2024
Mar 4:2024.03.03.24303677. doi: 10.1101/2024.03.03.24303677., PMID: 38496435, PMCID:
PMC10942527, 10.1101/2024.03.03.24303677
Goutman SA, Boss J, Jang DG, Piecuch C, Farid H, Batra M, Mukherjee B, Feldman EL,
Batterman SA., Residential exposure associations with ALS risk, survival, and phenotype:
a Michigan-based case-control study, Amyotroph Lateral Scler Frontotemporal Degener,
Amyotroph Lateral Scler Frontotemporal Degener. 2024 Aug;25(5-6):543-553. doi: 10.1080/21678421.2024.2336110.
Epub 2024 Apr 1., PMID: 38557405PMC11269018, 10.1080/21678421.2024.2336110
Jin W, Boss J, Bakulski KM, Goutman SA, Feldman EL, Fritsche LG, Mukherjee B., Improving
prediction models of amyotrophic lateral sclerosis (ALS) using polygenic, pre-existing
conditions, and survey-based risk scores in the UK Biobank, medRxiv, medRxiv [Preprint].
2024 Mar 30:2024.03.28.24305037. doi: 10.1101/2024.03.28.24305037., PMID: 38585910PMC10996827,
10.1101/2024.03.28.24305037
Kim C, Cathey AL, Park S, Watkins DJ, Mukherjee B, Rosario-Pabón ZY, Vélez-Vega CM,
Alshawabkeh AN, Cordero JF, Meeker JD., Associations of maternal blood metal concentrations
with plasma eicosanoids among pregnant women in Puerto Rico, Sci Total Environ, Sci
Total Environ. 2024 Jun 10;928:172295. doi: 10.1016/j.scitotenv.2024.172295. Epub
2024 Apr 7., PMID: 38588744, PMCID: , 10.1016/j.scitotenv.2024.172295
Suthar H, Manea T, Pak D, Woodbury M, Eick SM, Cathey A, Watkins DJ, Strakovsky RS,
Ryva BA, Pennathur S, Zeng L, Weller D, Park JS, Smith S, DeMicco E, Padula A, Fry
RC, Mukherjee B, Aguiar A, Geiger SD, Ng S, Huerta-Montanez G, Vélez-Vega C, Rosario
Z, Cordero JF, Zimmerman E, Woodruff TJ, Morello-Frosch R, Schantz SL, Meeker JD,
Alshawabkeh AN, Aung MT; Program Collaborators for Environmental Influences on Child
Health Outcomes., Cross-Sectional Associations between Prenatal Per- and Poly-Fluoroalkyl
Substances and Bioactive Lipids in Three Environmental Influences on Child Health
Outcomes (ECHO) Cohorts, Environ Sci Technol, Environ Sci Technol. 2024 May 14;58(19):8264-8277.
doi: 10.1021/acs.est.4c00094. Epub 2024 May 1., PMID: 38691655, PMCID: PMC11097396,
10.1021/acs.est.4c00094
Wiens J, Spector-Bagdady K, Mukherjee B., Toward Realizing the Promise of AI in Precision
Health Across the Spectrum of Care, Annu Rev Genomics Hum Genet, Annu Rev Genomics
Hum Genet. 2024 May 9. doi: 10.1146/annurev-genom-010323-010230. Online ahead of print.,
PMID: 38724019, PMCID: , 10.1146/annurev-genom-010323-010230
Salvatore M, Kundu R, Shi X, Friese CR, Lee S, Fritsche LG, Mondul AM, Hanauer D,
Pearce CL, Mukherjee B., To weight or not to weight? The effect of selection bias
in 3 large electronic health record-linked biobanks and recommendations for practice,
J Am Med Inform Assoc, J Am Med Inform Assoc. 2024 Jun 20;31(7):1479-1492. doi: 10.1093/jamia/ocae098.,
PMID: 38742457, PMCID: PMC11187425, 10.1093/jamia/ocae098
Siwakoti RC, Park S, Ferguson KK, Hao W, Cantonwine DE, Mukherjee B, McElrath TF,
Meeker JD., Prenatal per- and polyfluoroalkyl substances (PFAS) and maternal oxidative
stress: Evidence from the LIFECODES study, Chemosphere, Chemosphere. 2024 Jul;360:142363.
doi: 10.1016/j.chemosphere.2024.142363. Epub 2024 May 18., PMID: 38768789, PMCID:
, 10.1016/j.chemosphere.2024.142363
Park S, Siwakoti RC, Ferguson KK, Cathey AL, Hao W, Cantonwine DE, Mukherjee B, McElrath
TF, Meeker JD., Associations of urinary polycyclic aromatic hydrocarbon (PAH) metabolites
and their mixture with thyroid hormone concentration during pregnancy in the LIFECODES
cohort: A repeated measures study, Environ Res, Environ Res. 2024 Aug 15;255:119205.
doi: 10.1016/j.envres.2024.119205. Epub 2024 May 21., PMID: 38782334, PMCID: , 10.1016/j.envres.2024.119205
Laskaris Z, O'Neill MS, Batterman SA, Mukherjee B, Fobil JN, Robins TG., Cross-shift
changes in pulmonary function and occupational exposure to particulate matter among
e-waste workers in Ghana, Front Public Health, Front Public Health. 2024 May 9;12:1368112.
doi: 10.3389/fpubh.2024.1368112. eCollection 2024., PMID: 38784567PMC11111984, 10.3389/fpubh.2024.1368112
Yang Y, Dempsey W, Han P, Deshmukh Y, Richardson S, Tom B, Mukherjee B., Exploring
the Big Data Paradox for various estimands using vaccination data from the global
COVID-19 Trends and Impact Survey (CTIS), Sci Adv, Sci Adv. 2024 May 31;10(22):eadj0266.
doi: 10.1126/sciadv.adj0266. Epub 2024 May 31., PMID: 38820165, 10.1126/sciadv.adj0266
Grieve R, Yang Y, Abbott S, Babu GR, Bhattacharyya M, Dean N, Evans S, Jewell N, Langan
SM, Lee W, Molenberghs G, Smeeth L, Williamson E, Mukherjee B., Correction: The importance
of investing in data, models, experiments, team science, and public trust to help
policymakers prepare for the next pandemic, PLOS Glob Public Health, PLOS Glob Public
Health. 2024 Jun 14;4(6):e0003402. doi: 10.1371/journal.pgph.0003402. eCollection
2024., PMID: 38875224PMC11178187, 10.1371/journal.pgph.0003402
Golbus JR, Shi J, Gupta K, Stevens R, Jeganathan VSE, Luff E, Boyden T, Mukherjee
B, Kohnstamm S, Taralunga V, Kheterpal V, Kheterpal S, Resnicow K, Murphy S, Dempsey
W, Klasnja P, Nallamothu BK., Text Messages to Promote Physical Activity in Patients
With Cardiovascular Disease: A Micro-Randomized Trial of a Just-In-Time Adaptive Intervention,
Circ Cardiovasc Qual Outcomes, Circ Cardiovasc Qual Outcomes. 2024 Jul;17(7):e010731.
doi: 10.1161/CIRCOUTCOMES.123.010731. Epub 2024 Jun 18., PMID: 38887953, PMCID: PMC11251861,
10.1161/CIRCOUTCOMES.123.010731
Higgins Tejera C, Ware EB, Hicken MT, Kobayashi LC, Wang H, Blostein F, Zawistowski
M, Mukherjee B, Bakulski KM., The mediating role of systemic inflammation and moderating
role of racialization in disparities in incident dementia, Commun Med (Lond), Commun
Med (Lond). 2024 Jul 13;4(1):142. doi: 10.1038/s43856-024-00569-w., PMID: 39003383,
PMCID: PMC11246521, 10.1038/s43856-024-00569-w
Alimujiang A, Strecher V, McLean K, Mondul AM, Pearce CL, Mukherjee B., Decomposing
the association of psychosocial wellbeing with all-cause mortality: the mediating
role of physical health and lifestyle factors, Soc Psychiatry Psychiatr Epidemiol,
Soc Psychiatry Psychiatr Epidemiol. 2024 Jul 23. doi: 10.1007/s00127-024-02717-y.
Online ahead of print., PMID: 39044017, PMCID: , 10.1007/s00127-024-02717-y
Kandarpa M, Robinson D, Wu YM, Qin T, Pettit K, Li Q, Luker G, Sartor M, Chinnaiyan
A, Talpaz M., Broad Next-Generation Integrated Sequencing of Myelofibrosis Identifies
Disease-Specific and Age-Related Genomic Alterations, Clin Cancer Res, Clin Cancer
Res. 2024 May 1;30(9):1972-1983. doi: 10.1158/1078-0432.CCR-23-0372., PMID: 38386293PMC11061602,
10.1158/1078-0432.CCR-23-0372
Wytiaz V, Schwartz E, Rice JD, Zhao L, Jasty R, Schuetze S, Chugh R., Disparate Outcomes,
Biologic and Therapeutic Differences in Pediatric versus Adult Patients with Ewing
Sarcoma, Oncology, Oncology. 2024;102(1):1-8. doi: 10.1159/000533412. Epub 2023 Aug
18., PMID: 37598679, PMCID: , 10.1159/000533412
Keniston A, McCreight MS, Burden M, Moore SL, Haugen H, Rice J, Battaglia C., Communicating
Patient Discharge Readiness: An Implementation Evaluation in an Inpatient Hospital
Medicine Setting, J Nurs Care Qual, J Nurs Care Qual. 2024 Apr-Jun 01;39(2):151-158.
doi: 10.1097/NCQ.0000000000000738. Epub 2023 Sep 8., PMID: 37729000, PMCID: , 10.1097/NCQ.0000000000000738
Qin A, Wells L, Malhotra B, Gadgeel S, Schneider BJ, Ramnath N, Rice JD, Kalemkerian
GP., A Phase II Trial of Pevonedistat and Docetaxel in Patients With Previously Treated
Advanced Non-Small-Cell Lung Cancer, Clin Lung Cancer, Clin Lung Cancer. 2024 Mar;25(2):128-134.
doi: 10.1016/j.cllc.2023.10.011. Epub 2023 Oct 26., PMID: 37977950, PMCID: , 10.1016/j.cllc.2023.10.011
Shelton SK, Rice JD, Knoepke CE, Matlock DD, Havranek EP, Daugherty SL, Perman SM.,
Examining the Impact of Layperson Rescuer Gender on the Receipt of Bystander CPR for
Women in Cardiac Arrest, Circ Cardiovasc Qual Outcomes, Circ Cardiovasc Qual Outcomes.
2024 Apr;17(4):e010249. doi: 10.1161/CIRCOUTCOMES.123.010249. Epub 2024 Mar 27., PMID:
38533649, PMCID: PMC11245171, 10.1161/CIRCOUTCOMES.123.010249
Iwamoto SJ, Rice JD, Moreau KL, Cornier MA, Wierman ME, Mancuso MP, Gebregzabheir
A, Hammond DB, Rothman MS., The association of gender-affirming hormone therapy duration
and body mass index on bone mineral density in gender diverse adults, J Clin Transl
Endocrinol, J Clin Transl Endocrinol. 2024 Apr 30;36:100348. doi: 10.1016/j.jcte.2024.100348.
eCollection 2024 Jun., PMID: 38756206PMC11096741, 10.1016/j.jcte.2024.100348
Austin S, Hanson EN, Delacroix E, Bacon E, Rice J, Gerido LH, Rizzo E, Pleasant V,
Stoffel EM, Griggs JJ, Resnicow K., Impact of barriers and motivators on intention
and confidence to undergo hereditary cancer genetic testing, J Genet Couns, J Genet
Couns. 2024 May 27. doi: 10.1002/jgc4.1926. Online ahead of print., PMID: 38803214,
10.1002/jgc4.1926
Nokoff NJ, Bothwell S, Rice JD, Cree MG, Kelsey MM, Moreau KL, Zeitler P, Nadeau KJ.,
Insulin sensitivity, body composition and bone mineral density after testosterone
treatment in transgender youth with and without prior GnRH agonist therapy, J Clin
Transl Endocrinol, J Clin Transl Endocrinol. 2024 Jun 1;36:100356. doi: 10.1016/j.jcte.2024.100356.
eCollection 2024 Jun., PMID: 38948245, PMCID: PMC11214195, 10.1016/j.jcte.2024.100356
Edwards DM, Schonewolf CA, Rice JD, Schipper M, Haken RKT, Matuszak M, Balter J, Jarema
D, Arenberg DA, Piert M, Qin A, Kalemkerian GP, Schneider BJ, Ramnath N, Chapman CH,
Elliott DA, Lawrence TS, Hearn J, Hayman JA, Jolly S., Phase II Trial Assessing Toxicity
of Personalized Response-Based Radiation Treatment in Patients with Locally Advanced
Non-Small Cell Lung Cancer, Int J Radiat Oncol Biol Phys, Int J Radiat Oncol Biol
Phys. 2024 Jul 4:S0360-3016(24)00749-1. doi: 10.1016/j.ijrobp.2024.06.018. Online
ahead of print., PMID: 38971385, PMCID: , 10.1016/j.ijrobp.2024.06.018
Dukewich M, Dodge JL, Lucey MR, Rice JP, Shetty K, Jakhete N, Im GY, Weinberg EM,
Hsu C, Smith C, Ghobrial RM, Therapondos G, Shoreibah M, Aryan M, Eswaran S, Fix OK,
Maddur H, Terrault N, Lee BP., The Survival Benefit of Re-abstinence After Harmful
Alcohol Use Following Early Liver Transplant for Severe Alcohol-Associated Hepatitis:
A Multi-Center ACCELERATE Study, Am J Gastroenterol, Am J Gastroenterol. 2024 Jul
12. doi: 10.14309/ajg.0000000000002956. Online ahead of print., PMID: 38994850, PMCID:
, 10.14309/ajg.0000000000002956
Wang K, Perera BPU, Morgan RK, Sala-Hamrick K, Geron V, Svoboda LK, Faulk C, Dolinoy
DC, Sartor MA., piOxi database: a web resource of germline and somatic tissue piRNAs
identified by chemical oxidation, Database (Oxford), Database (Oxford). 2024 Jan 10;2024:baad096.
doi: 10.1093/database/baad096., PMID: 38204359, PMCID: PMC10782149, 10.1093/database/baad096
Wang K, Kim N, Bagherian M, Li K, Chou E, Colacino JA, Dolinoy DC, Sartor MA., Gene
Target Prediction of Environmental Chemicals Using Coupled Matrix-Matrix Completion,
Environ Sci Technol, Environ Sci Technol. 2024 Apr 2;58(13):5889-5898. doi: 10.1021/acs.est.4c00458.
Epub 2024 Mar 19., PMID: 38501580, PMCID: PMC11131040, 10.1021/acs.est.4c00458
Petroff RL, Dolinoy DC, Wang K, Montrose L, Padmanabhan V, Peterson KE, Ruden DM,
Sartor MA, Svoboda LK, Téllez-Rojo MM, Goodrich JM., Translational toxicoepigenetic
Meta-Analyses identify homologous gene DNA methylation reprogramming following developmental
phthalate and lead exposure in mouse and human offspring, Environ Int, Environ Int.
2024 Apr;186:108575. doi: 10.1016/j.envint.2024.108575. Epub 2024 Mar 11., PMID: 38507935,
PMCID: , 10.1016/j.envint.2024.108575
Núñez FJ, Banerjee K, Mujeeb AA, Mauser A, Tronrud CE, Zhu Z, Taher A, Kadiyala P,
Carney SV, Garcia-Fabiani MB, Comba A, Alghamri MS, McClellan BL, Faisal SM, Nwosu
ZC, Hong HS, Qin T, Sartor MA, Ljungman M, Cheng SY, Appelman HD, Lowenstein PR, Lahann
J, Lyssiotis CA, Castro MG., Epigenetic Reprogramming of Autophagy Drives Mutant IDH1
Glioma Progression and Response to Radiation, bioRxiv, bioRxiv [Preprint]. 2024 Mar
13:2024.03.08.584091. doi: 10.1101/2024.03.08.584091., PMID: 38559270, PMCID: PMC10979892,
10.1101/2024.03.08.584091
Wang K, Sartor MA, Colacino JA, Dolinoy DC, Svoboda LK., Sex-Specific Deflection of
Age-Related DNA Methylation and Gene Expression in Mouse Heart by Perinatal Toxicant
Exposures, bioRxiv, bioRxiv [Preprint]. 2024 Apr 28:2024.04.25.591125. doi: 10.1101/2024.04.25.591125.,
PMID: 38712146PMC11071472, 10.1101/2024.04.25.591125
Morgan RK, Wang K, Svoboda LK, Rygiel CA, Lalancette C, Cavalcante R, Bartolomei MS,
Prasasya R, Neier K, Perera BPU, Jones TR, Colacino JA, Sartor MA, Dolinoy DC., Effects
of Developmental Lead and Phthalate Exposures on DNA Methylation in Adult Mouse Blood,
Brain, and Liver: A Focus on Genomic Imprinting by Tissue and Sex, Environ Health
Perspect, Environ Health Perspect. 2024 Jun;132(6):67003. doi: 10.1289/EHP14074. Epub
2024 Jun 4., PMID: 38833407PMC11166413, 10.1289/EHP14074
Li S, Garb BF, Qin T, Soppe S, Lopez E, Patil S, D'Silva NJ, Rozek LS, Sartor MA.,
Tumor Subtype Classification Tool for HPV-associated Head and Neck Cancers, bioRxiv,
bioRxiv [Preprint]. 2024 Jul 10:2024.07.05.601906. doi: 10.1101/2024.07.05.601906.,
PMID: 39026719, PMCID: PMC11257489, 10.1101/2024.07.05.601906
Ramanathan S, Hochstedler KA, Laucis AM, Movsas B, Stevens CW, Kestin LL, Dominello
MM, Grills IS, Matuszak M, Hayman J, Paximadis PA, Schipper MJ, Jolly S, Boike TP;
Michigan Radiation Oncology Quality Consortium., Predictors of Early Hospice or Death
in Patients With Inoperable Lung Cancer Treated With Curative Intent, Clin Lung Cancer,
Clin Lung Cancer. 2024 Jun;25(4):e201-e209. doi: 10.1016/j.cllc.2023.12.014. Epub
2023 Dec 27., PMID: 38290875, PMCID: , 10.1016/j.cllc.2023.12.014
Rankin J, Bedrava J, Covington E, Johnson JL, Pollard-Larkin J, Schipper MJ, Castillo
R, Woodward M, Xing YH, Paradis KC., Women in the Medical Physics Workforce: Insights
from Membership Trends of the American Association of Physicists in Medicine, 1993
to 2023, Int J Radiat Oncol Biol Phys, Int J Radiat Oncol Biol Phys. 2024 Aug 1;119(5):1336-1343.
doi: 10.1016/j.ijrobp.2024.02.013. Epub 2024 Feb 20., PMID: 38387813, 10.1016/j.ijrobp.2024.02.013
Gharzai LA, Morris E, Suresh K, Nguyen-Tân PF, Rosenthal DI, Gillison ML, Harari PM,
Garden AS, Koyfman S, Caudell JJ, Jones CU, Mitchell DL, Krempl G, Ridge JA, Gensheimer
MF, Bonner JA, Filion E, Dunlap NE, Stokes WA, Le QT, Torres-Saavedra P, Mierzwa M,
Schipper MJ., Surrogate endpoints in clinical trials of p16-positive squamous cell
carcinoma of the oropharynx: an individual patient data meta-analysis, Lancet Oncol,
Lancet Oncol. 2024 Mar;25(3):366-375. doi: 10.1016/S1470-2045(24)00016-0., PMID: 38423050,
PMCID: PMC10962533, 10.1016/S1470-2045(24)00016-0
Dykstra MP, Regan SN, Yin HM, McLaughlin PW, Boike T, Bhatt A, Zaki M, Kendrick D,
Mislmani M, Paluch S, Litzenberg DW, Mietzel MA, Narayana V, Smith A, Heimburger DK,
Schipper MJ, Jackson WC, Dess RT; Michigan Radiation Oncology Quality Consortium.,
Variation in Androgen Deprivation Therapy Use Among Men With Intermediate-Risk Prostate
Cancer: Results From a Statewide Radiation Oncology Quality Consortium, Int J Radiat
Oncol Biol Phys, Int J Radiat Oncol Biol Phys. 2024 Jun 4:S0360-3016(24)00689-8. doi:
10.1016/j.ijrobp.2024.05.026. Online ahead of print., PMID: 38844140, PMCID: , 10.1016/j.ijrobp.2024.05.026
D'Souza RS, Barrington MJ, Sen A, Mascha EJ, Kelley GA., Systematic Reviews and Meta-analyses
in Regional Anesthesia and Pain Medicine (Part II): Guidelines for Performing the
Systematic Review, Anesth Analg, Anesth Analg. 2024 Feb 1;138(2):395-419. doi: 10.1213/ANE.0000000000006607.
Epub 2024 Jan 12., PMID: 37942964, PMCID: , 10.1213/ANE.0000000000006607
D'Souza RS, Barrington MJ, Sen A, Mascha EJ, Kelley GA., Systematic reviews and meta-analyses
in regional anesthesia and pain medicine (Part II): guidelines for performing the
systematic review, Reg Anesth Pain Med, Reg Anesth Pain Med. 2024 Jun 3;49(6):403-422.
doi: 10.1136/rapm-2023-104802., PMID: 37945064, PMCID: , 10.1136/rapm-2023-104802
Dutta D, Sen A, Satagopan JM., Identifying genes associated with disease outcomes
using joint sparse canonical correlation analysis-An application in renal clear cell
carcinoma, Genet Epidemiol, Genet Epidemiol. 2024 May 15. doi: 10.1002/gepi.22566.
Online ahead of print., PMID: 38751238, PMCID: , 10.1002/gepi.22566
McKee K, Bassis CM, Golob J, Palazzolo B, Sen A, Comstock SS, Rosas-Salazar C, Stanford
JB, O'Connor T, Gern JE, Paneth N, Dunlop AL; ECHO Cohort Consortium., Host factors
are associated with vaginal microbiome structure in pregnancy in the ECHO Cohort Consortium,
Sci Rep, Sci Rep. 2024 May 23;14(1):11798. doi: 10.1038/s41598-024-62537-7., PMID:
38782975, PMCID: PMC11116393, 10.1038/s41598-024-62537-7
Gold KJ, Chen D, Shumer G, Kinney D, Marshall L, Sen A, Klinkman MS., Patient-Reported
Reasons for Sending Portal Messages: A Survey of Use in a Family Medicine Department,
J Gen Intern Med, J Gen Intern Med. 2024 Jun 3. doi: 10.1007/s11606-024-08815-6. Online
ahead of print., PMID: 38831243, PMCID: , 10.1007/s11606-024-08815-6
Buis LR, Kim J, Sen A, Chen D, Dawood K, Kadri R, Muladore R, Plegue M, Richardson
CR, Djuric Z, McNaughton C, Hutton D, Robert LP, Park SY, Levy P., The Effect of an
mHealth Self-Monitoring Intervention (MI-BP) on Blood Pressure Among Black Individuals
With Uncontrolled Hypertension: Randomized Controlled Trial, JMIR Mhealth Uhealth,
JMIR Mhealth Uhealth. 2024 Jun 28;12:e57863. doi: 10.2196/57863., PMID: 38941601PMC11245662,
10.2196/57863
Roberts EK, Elliott MR, Taylor JMG., Surrogacy validation for time-to-event outcomes
with illness-death frailty models, Biom J, Biom J. 2024 Jan;66(1):e2200324. doi: 10.1002/bimj.202200324.
Epub 2023 Sep 29., PMID: 37776057PMC10873101, 10.1002/bimj.202200324
Zhang X, Ilyas OS, Getz KR, Rozek LS, Taylor JMG, Chinn SB, Wolf GT, Mondul AM., Aspirin
use and head and neck cancer survival and recurrence, Cancer Causes Control, Cancer
Causes Control. 2024 Apr;35(4):605-609. doi: 10.1007/s10552-023-01815-7. Epub 2023
Nov 17., PMID: 37975972, 10.1007/s10552-023-01815-7
Rizopoulos D, Taylor JMG., Optimizing dynamic predictions from joint models using
super learning, Stat Med, Stat Med. 2024 Mar 30;43(7):1315-1328. doi: 10.1002/sim.10010.
Epub 2024 Jan 25., PMID: 38270062, 10.1002/sim.10010
Choi K, Taylor JMG, Han P., Robust data integration from multiple external sources
for generalized linear models with binary outcomes, Biometrics, Biometrics. 2024 Jan
29;80(1):ujad005. doi: 10.1093/biomtc/ujad005., PMID: 38364808, PMCID: PMC10873565,
10.1093/biomtc/ujad005
Benjamin WJ, Feng AL, Heft Neal M, Bellile E, Casper KA, Malloy KM, Rosko AJ, Stucken
CL, Prince ME, Mierzwa ML, Taylor JMG, Eisbruch A, Spector ME, Wolf GT, Swiecicki
PL, Worden FP, Chinn SB., Utility of bioselection with neoadjuvant chemotherapy for
organ preservation in patients with T4 laryngeal cancer, Oral Oncol, Oral Oncol. 2024
Sep;156:106917. doi: 10.1016/j.oraloncology.2024.106917. Epub 2024 Jun 28., PMID:
38945011, 10.1016/j.oraloncology.2024.106917
Roberts EK, Luo L, Mondul AM, Banerjee M, Veenstra CM, Mariotto AB, Schipper MJ, He
K, Taylor JMG, Brouwer AF., Time-varying associations of patient and tumor characteristics
with cancer survival: an analysis of SEER data across 14 cancer sites, 2004-2017,
Cancer Causes Control, Cancer Causes Control. 2024 May 29. doi: 10.1007/s10552-024-01888-y.
Online ahead of print., PMID: 38811511, 10.1007/s10552-024-01888-y
Chase EC, Taylor JMG, Boonstra PS., Modeling basal body temperature data using horseshoe
process regression, Stat Med, Stat Med. 2024 Feb 28;43(5):817-832. doi: 10.1002/sim.9991.
Epub 2023 Dec 14., PMID: 38095078, 10.1002/sim.9991
Carpenter ES, Kadiyala P, Elhossiny AM, Kemp SB, Li J, Steele NG, Nicolle R, Nwosu
ZC, Freeman J, Dai H, Paglia D, Du W, Donahue K, Morales J, Medina-Cabrera PI, Bonilla
ME, Harris L, The S, Gunchick V, Peterson N, Brown K, Mattea M, Espinoza CE, McGue
J, Kabala SM, Baliira RK, Renollet NM, Mooney AG, Liu J, Bhalla S, Farida JP, Ko C,
Machicado JD, Kwon RS, Wamsteker EJ, Schulman A, Anderson MA, Law R, Prabhu A, Coulombe
PA, Rao A, Frankel TL, Bednar F, Shi J, Sahai V, Pasca Di Magliano M., KRT17high/CXCL8+
Tumor Cells Display Both Classical and Basal Features and Regulate Myeloid Infiltration
in the Pancreatic Cancer Microenvironment, Clin Cancer Res, Clin Cancer Res. 2024
Jun 3;30(11):2497-2513. doi: 10.1158/1078-0432.CCR-23-1421., PMID: 37851080PMC11024060,
10.1158/1078-0432.CCR-23-1421
Zhang Q, Jiang L, Wang W, Huber AK, Valvo VM, Jungles KM, Holcomb EA, Pearson AN,
The S, Wang Z, Parsels LA, Parsels JD, Wahl DR, Rao A, Sahai V, Lawrence TS, Green
MD, Morgan MA., Potentiating the radiation-induced type I interferon antitumoral immune
response by ATM inhibition in pancreatic cancer, JCI Insight, JCI Insight. 2024 Feb
20;9(6):e168824. doi: 10.1172/jci.insight.168824., PMID: 38376927PMC11063931, 10.1172/jci.insight.168824
Stensland KD, Caram MEV, Herr DJ, Burns JA, Sparks JB, Elliott DA, Shin C, Morgan
TM, Zaslavsky A, Hollenbeck BK, Tsodikov A, Skolarus TA., National Long-term Survival
Estimates After Radical Prostatectomy for Prostate Cancer, Urology, Urology. 2024
Feb;184:135-141. doi: 10.1016/j.urology.2023.10.018. Epub 2023 Nov 10., PMID: 37951360PMC11229680,
10.1016/j.urology.2023.10.018
Devasia TP, Tsodikov A., Efficiency of the Breslow estimator in semiparametric transformation
models, Lifetime Data Anal, Lifetime Data Anal. 2024 Apr;30(2):291-309. doi: 10.1007/s10985-023-09611-w.
Epub 2023 Nov 26., PMID: 38007694PMC11237962, 10.1007/s10985-023-09611-w
McLaughlin PW, Cousins MM, Tsodikov A, Soni PD, Crook JM., Mortality reduction and
cumulative excess incidence (CEI) in the prostate-specific antigen (PSA) screening
era, Sci Rep, Sci Rep. 2024 Mar 9;14(1):5810. doi: 10.1038/s41598-024-55859-z., PMID:
38461151PMC10925039, 10.1038/s41598-024-55859-z
Leroux A, Crainiceanu C, Zeger S, Taub M, Ansari B, Wager TD, Bayman E, Coffey C,
Langefeld C, McCarthy R, Tsodikov A, Brummet C, Clauw DJ, Edwards RR, Lindquist MA;
; A2CPS Consortium., Statistical modeling of acute and chronic pain patient-reported
outcomes obtained from ecological momentary assessment, Pain, Pain. 2024 May 7. doi:
10.1097/j.pain.0000000000003214. Online ahead of print., PMID: 38718196, 10.1097/j.pain.0000000000003214
Gökbağ B, Tang S, Fan K, Cheng L, Yu L, Zhao Y, Li L., SLKB: synthetic lethality knowledge
base, Nucleic Acids Res, Nucleic Acids Res. 2024 Jan 5;52(D1):D1418-D1428. doi: 10.1093/nar/gkad806.,
PMID: 37889037, PMCID: PMC10767912, 10.1093/nar/gkad806
Abi-Saab T, Lozar T, Chen Y, Tannenbaum AP, Geye H, Yu M, Weisman P, Harari PM, Kimple
RJ, Lambert PF, Lloyd RV, Hu R., Morphologic Spectrum of HPV-associated Sinonasal
Carcinomas, Head Neck Pathol, Head Neck Pathol. 2024 Aug 5;18(1):67. doi: 10.1007/s12105-024-01670-1.,
PMID: 39101976, PMCID: PMC11300749, 10.1007/s12105-024-01670-1
Miller EJ, Rose TL, Maughan BL, Milowsky MI, Bilen MA, Carthon BC, Gao X, Rapisuwon
S, Zhao Q, Yu M, Agarwal N, Galsky MD., Phase 2 trial of tremelimumab in patients
with metastatic urothelial cancer previously treated with programmed death 1/programmed
death ligand 1 blockade, Cancer, Cancer. 2024 May 1;130(9):1642-1649. doi: 10.1002/cncr.35179.
Epub 2024 Jan 5., PMID: 38180804, PMCID: , 10.1002/cncr.35179
Galsky MD, Daneshmand S, Izadmehr S, Gonzalez-Kozlova E, Chan KG, Lewis S, Achkar
BE, Dorff TB, Cetnar JP, Neil BO, D'Souza A, Mamtani R, Kyriakopoulos C, Jun T, Gogerly-Moragoda
M, Brody R, Xie H, Nie K, Kelly G, Horowitz A, Kinoshita Y, Ellis E, Nose Y, Ioannou
G, Cabal R, Del Valle DM, Haines GK, Wang L, Mouw KW, Samstein RM, Mehrazin R, Bhardwaj
N, Yu M, Zhao Q, Kim-Schulze S, Sebra R, Zhu J, Gnjatic S, Sfakianos J, Pal SK., Author
Correction: Gemcitabine and cisplatin plus nivolumab as organ-sparing treatment for
muscle-invasive bladder cancer: a phase 2 trial, Nat Med, Nat Med. 2024 Apr;30(4):1211.
doi: 10.1038/s41591-024-02814-0., PMID: 38242983, PMCID: PMC11031387, 10.1038/s41591-024-02814-0
Rydzewski NR, Shi Y, Li C, Chrostek MR, Bakhtiar H, Helzer KT, Bootsma ML, Berg TJ,
Harari PM, Floberg JM, Blitzer GC, Kosoff D, Taylor AK, Sharifi MN, Yu M, Lang JM,
Patel KR, Citrin DE, Sundling KE, Zhao SG., A platform-independent AI tumor lineage
and site (ATLAS) classifier, Commun Biol, Commun Biol. 2024 Mar 13;7(1):314. doi:
10.1038/s42003-024-05981-5., PMID: 38480799, PMCID: PMC10937974, 10.1038/s42003-024-05981-5
Yu S, Yu M, Keane B, Mauro DM, Helft PR, Harris WP, Sanoff HK, Johnson MS, O'Neil
B, McRee AJ, Somasundaram A., A Pilot Study of Pembrolizumab in Combination With Y90
Radioembolization in Subjects With Poor Prognosis Hepatocellular Carcinoma, Oncologist,
Oncologist. 2024 Mar 4;29(3):270-e413. doi: 10.1093/oncolo/oyad331., PMID: 38325328PMC10911903,
10.1093/oncolo/oyad331
Chen Y, Yu M., Randomized phase II selection design with order constrained strata,
Biometrics, Biometrics. 2024 Jan 29;80(1):ujad013. doi: 10.1093/biomtc/ujad013., PMID:
38364810PMC10873566, 10.1093/biomtc/ujad013
Katz SJ, Abrahamse P, Hodan R, Kurian AW, Rankin A, Tocco RS, Rios-Ventura S, Ward
KC, An LC., Cascade Genetic Risk Education and Testing in Families With Hereditary
Cancer Syndromes: A Pilot Study, JCO Oncol Pract, JCO Oncol Pract. 2023 Jun;19(6):e848-e858.
doi: 10.1200/OP.22.00677. Epub 2023 Mar 15., PMID: 36921235, PMCID: PMC10332838, 10.1200/OP.22.00677
Ghazal LV, Abrahamse P, Ward KC, Morris AM, Hawley ST, Veenstra CM., Financial Toxicity
and Its Association With Health-Related Quality of Life Among Partners of Colorectal
Cancer Survivors, JAMA Netw Open, JAMA Netw Open. 2023 Apr 3;6(4):e235897. doi: 10.1001/jamanetworkopen.2023.5897.,
PMID: 37022684, PMCID: PMC10080378, 10.1001/jamanetworkopen.2023.5897
Patel MA, Shah JL, Brinley FJ 4th, Abrahamse PH, Veenstra CM, Schott AF., Investigating
potential disparities in clinical trial eligibility and enrollment at an NCI-designated
comprehensive cancer center, Cancer Med, Cancer Med. 2023 Jun;12(11):12802-12812.
doi: 10.1002/cam4.5933. Epub 2023 May 7., PMID: 37151163, PMCID: PMC10278521, 10.1002/cam4.5933
Mullins MA, Atluri N, Abrahamse P, Radhakrishnan A, Hamilton AS, Ward KC, Hawley ST,
Katz SJ, Wallner LP., Primary care provider attitudes about and tendency to use non-recommended
surveillance tests after curative breast cancer treatment, Breast Cancer Res Treat,
Breast Cancer Res Treat. 2023 Aug;200(3):391-398. doi: 10.1007/s10549-023-06994-0.
Epub 2023 Jun 9., PMID: 37296280, PMCID: PMC10706825, 10.1007/s10549-023-06994-0
Kurian AW, Abrahamse P, Furgal A, Ward KC, Hamilton AS, Hodan R, Tocco R, Liu L, Berek
JS, Hoang L, Yussuf A, Susswein L, Esplin ED, Slavin TP, Gomez SL, Hofer TP, Katz
SJ., Germline Genetic Testing After Cancer Diagnosis, JAMA, JAMA. 2023 Jul 3;330(1):43-51.
doi: 10.1001/jama.2023.9526., PMID: 37276540, PMCID: PMC10242510, 10.1001/jama.2023.9526
Al-Holou WN, Wang H, Ravikumar V, Shankar S, Oneka M, Fehmi Z, Verhaak RG, Kim H,
Pratt D, Camelo-Piragua S, Speers C, Wahl DR, Hollon T, Sagher O, Heth JA, Muraszko
KM, Lawrence TS, de Carvalho AC, Mikkelsen T, Rao A, Rehemtulla A., Subclonal evolution
and expansion of spatially distinct THY1-positive cells is associated with recurrence
in glioblastoma, Neoplasia, Neoplasia. 2023 Feb;36:100872. doi: 10.1016/j.neo.2022.100872.
Epub 2023 Jan 6., PMID: 36621024, PMCID: PMC9841165, 10.1016/j.neo.2022.100872
Pati S, Baid U, Edwards B, Sheller M, Wang SH, Reina GA, Foley P, Gruzdev A, Karkada
D, Davatzikos C, Sako C, Ghodasara S, Bilello M, Mohan S, Vollmuth P, Brugnara G,
Preetha CJ, Sahm F, Maier-Hein K, Zenk M, Bendszus M, Wick W, Calabrese E, Rudie J,
Villanueva-Meyer J, Cha S, Ingalhalikar M, Jadhav M, Pandey U, Saini J, Garrett J,
Larson M, Jeraj R, Currie S, Frood R, Fatania K, Huang RY, Chang K, Balaña C, Capellades
J, Puig J, Trenkler J, Pichler J, Necker G, Haunschmidt A, Meckel S, Shukla G, Liem
S, Alexander GS, Lombardo J, Palmer JD, Flanders AE, Dicker AP, Sair HI, Jones CK,
Venkataraman A, Jiang M, So TY, Chen C, Heng PA, Dou Q, Kozubek M, Lux F, Michálek
J, Matula P, Keřkovský M, Kopřivová T, Dostál M, Vybíhal V, Vogelbaum MA, Mitchell
JR, Farinhas J, Maldjian JA, Yogananda CGB, Pinho MC, Reddy D, Holcomb J, Wagner BC,
Ellingson BM, Cloughesy TF, Raymond C, Oughourlian T, Hagiwara A, Wang C, To MS, Bhardwaj
S, Chong C, Agzarian M, Falcão AX, Martins SB, Teixeira BCA, Sprenger F, Menotti D,
Lucio DR, LaMontagne P, Marcus D, Wiestler B, Kofler F, Ezhov I, Metz M, et al., Author
Correction: Federated learning enables big data for rare cancer boundary detection,
Nat Commun, Nat Commun. 2023 Jan 26;14(1):436. doi: 10.1038/s41467-023-36188-7., PMID:
36702828, PMCID: PMC9879935, 10.1038/s41467-023-36188-7
Malgulwar PB, Danussi C, Dharmaiah S, Johnson WE, Rao A, Huse JT., Sirtuin 2 inhibition
modulates chromatin landscapes genome-wide to induce senescence in ATRX-deficient
malignant glioma, bioRxiv, bioRxiv [Preprint]. 2023 Jan 10:2023.01.09.523324. doi:
10.1101/2023.01.09.523324., PMID: 36711727, PMCID: PMC9882017, 10.1101/2023.01.09.523324
Pun M, Pratt D, Nano PR, Joshi PK, Jiang L, Englinger B, Rao A, Cieslik M, Chinnaiyan
AM, Aldape K, Pfister S, Filbin MG, Bhaduri A, Venneti S., Common molecular features
of H3K27M DMGs and PFA ependymomas map to hindbrain developmental pathways, Acta Neuropathol
Commun, Acta Neuropathol Commun. 2023 Feb 9;11(1):25. doi: 10.1186/s40478-023-01514-z.,
PMID: 36759899, PMCID: PMC9912509, 10.1186/s40478-023-01514-z
Francisco-Cruz A, Rocha P, Reuben A, Krishnan SN, Das P, Chen R, Quek K, Li J, Parra
ER, Solis LM, Barua S, Jiang M, Lazcano R, Chow CW, Behrens C, Gumb C, Little L, Fukuoka
J, Kalhor N, Weissferdt A, Kadara H, Heymach JV, Swisher S, Sepesi B, Rao A, Moran
C, Zhang J, Lee JJ, Fujimoto J, Futreal PA, Wistuba II, Peterson CB, Zhang J., Analysis
of Immune Intratumor Heterogeneity Highlights Immunoregulatory and Coinhibitory Lymphocytes
as Hallmarks of Recurrence in Stage I Non-Small Cell Lung Cancer, Mod Pathol, Mod
Pathol. 2023 Jan;36(1):100028. doi: 10.1016/j.modpat.2022.100028., PMID: 36788067,
PMCID: PMC10251498, 10.1016/j.modpat.2022.100028
Scott AJ, Correa LO, Edwards DM, Sun Y, Ravikumar V, Andren AC, Zhang L, Srinivasan
S, Jairath N, Verbal K, Muraszko K, Sagher O, Carty SA, Hervey-Jumper S, Orringer
D, Kim MM, Junck L, Umemura Y, Leung D, Venneti S, Camelo-Piragua S, Lawrence TS,
Ippolito JE, Al-Holou WN, Chinnaiyan P, Heth J, Rao A, Lyssiotis CA, Wahl DR., Metabolomic
Profiles of Human Glioma Inform Patient Survival, Antioxid Redox Signal, Antioxid
Redox Signal. 2023 Nov;39(13-15):942-956. doi: 10.1089/ars.2022.0085. Epub 2023 Apr
27., PMID: 36852494, PMCID: PMC10655010, 10.1089/ars.2022.0085
Saldarriaga OA, Krishnan S, Wanninger TG, Oneka M, Rao A, Bao D, Arroyave E, Gosnell
J, Kueht M, Moghe A, Millian D, Jiao J, Sanchez JI, Spratt H, Beretta L, Stevenson
HL., Patients with fibrosis from non-alcoholic steatohepatitis have heterogeneous
intrahepatic macrophages and therapeutic targets, medRxiv, medRxiv [Preprint]. 2023
Feb 23:2023.02.16.23285924. doi: 10.1101/2023.02.16.23285924., PMID: 36865099, PMCID:
PMC9980226, 10.1101/2023.02.16.23285924
Reddy P, Zhao D, Ravikumar V, Lauder E, Li L, Sun Y, Oravecz-Wilson K, Brooks M, Keller
E, Chen F, Maneix L, Santibanez A, Creighton C, Rao A., Inflammatory memory restrains
intestinal stem cell regeneration, Res Sq, Res Sq [Preprint]. 2023 Mar 7:rs.3.rs-2566520.
doi: 10.21203/rs.3.rs-2566520/v1., PMID: 36945465, PMCID: PMC10029116, 10.21203/rs.3.rs-2566520/v1
Harms PW, Frankel TL, Moutafi M, Rao A, Rimm DL, Taube JM, Thomas D, Chan MP, Pantanowitz
L., Multiplex Immunohistochemistry and Immunofluorescence: A Practical Update for
Pathologists, Mod Pathol, Mod Pathol. 2023 Jul;36(7):100197. doi: 10.1016/j.modpat.2023.100197.
Epub 2023 Apr 25., PMID: 37105494, PMCID: , 10.1016/j.modpat.2023.100197
Ravikumar V, Xu T, Al-Holou WN, Fattahi S, Rao A., Efficient Inference of Spatially-Varying
Gaussian Markov Random Fields With Applications in Gene Regulatory Networks, IEEE/ACM
Trans Comput Biol Bioinform, IEEE/ACM Trans Comput Biol Bioinform. 2023 Sep-Oct;20(5):2920-2932.
doi: 10.1109/TCBB.2023.3282028. Epub 2023 Oct 9., PMID: 37276119, PMCID: PMC10623339,
10.1109/TCBB.2023.3282028
Lee J, Warner E, Shaikhouni S, Bitzer M, Kretzler M, Gipson D, Pennathur S, Bellovich
K, Bhat Z, Gadegbeku C, Massengill S, Perumal K, Saha J, Yang Y, Luo J, Zhang X, Mariani
L, Hodgin JB, Rao A., Clustering-based spatial analysis (CluSA) framework through
graph neural network for chronic kidney disease prediction using histopathology images,
Sci Rep, Sci Rep. 2023 Aug 5;13(1):12701. doi: 10.1038/s41598-023-39591-8., PMID:
37543648, PMCID: PMC10404289, 10.1038/s41598-023-39591-8
Lee J, Narang S, Martinez J, Rao G, Rao A., Association of graph-based spatial features
with overall survival status of glioblastoma patients, Sci Rep, Sci Rep. 2023 Oct
9;13(1):17046. doi: 10.1038/s41598-023-44353-7., PMID: 37813981, PMCID: PMC10562480,
10.1038/s41598-023-44353-7
Eliason J, Rao A., Investigating Ecological Interactions in the Tumor Microenvironment
using Joint Species Distribution Models for Point Patterns, bioRxiv, bioRxiv [Preprint].
2023 Nov 16:2023.11.14.567108. doi: 10.1101/2023.11.14.567108., PMID: 38014073, PMCID:
PMC10680696, 10.1101/2023.11.14.567108
Warner E, Lee J, Krishnan S, Wang N, Mohammed S, Srinivasan A, Bapuraj J, Rao A.,
Low-parameter supervised learning models can discriminate pseudoprogression and true
progression in non-perfusion-based MRI, Annu Int Conf IEEE Eng Med Biol Soc, Annu
Int Conf IEEE Eng Med Biol Soc. 2023 Jul;2023:1-4. doi: 10.1109/EMBC40787.2023.10340435.,
PMID: 38083692, PMCID: , 10.1109/EMBC40787.2023.10340435
Griffith BD, Lazarus J, McGue J, Krishnan S, D'Angelica MI, Shia J, Dobrosotskaya
I, Shi J, Edwards J, Rao A, Frankel TL., Unique characteristics of the tumor immune
microenvironment in young patients with metastatic colorectal cancer, Front Immunol,
Front Immunol. 2023 Dec 13;14:1289402. doi: 10.3389/fimmu.2023.1289402. eCollection
2023., PMID: 38152402, PMCID: PMC10751347, 10.3389/fimmu.2023.1289402
Saldarriaga OA, Wanninger TG, Arroyave E, Gosnell J, Krishnan S, Oneka M, Bao D, Millian
DE, Kueht ML, Moghe A, Jiao J, Sanchez JI, Spratt H, Beretta L, Rao A, Burks JK, Stevenson
HL., Heterogeneity in intrahepatic macrophage populations and druggable target expression
in patients with steatotic liver disease-related fibrosis, JHEP Rep, JHEP Rep. 2023
Nov 3;6(1):100958. doi: 10.1016/j.jhepr.2023.100958. eCollection 2024 Jan., PMID:
38162144, PMCID: PMC10757256, 10.1016/j.jhepr.2023.100958
Das P, Peterson CB, Ni Y, Reuben A, Zhang J, Zhang J, Do KA, Baladandayuthapani V.,
Bayesian hierarchical quantile regression with application to characterizing the immune
architecture of lung cancer, Biometrics, Biometrics. 2023 Sep;79(3):2474-2488. doi:
10.1111/biom.13774. Epub 2022 Nov 3., PMID: 36239535, PMCID: PMC10102253, 10.1111/biom.13774
Morikawa A, Li J, Ulintz P, Cheng X, Apfel A, Robinson D, Hopkins A, Kumar-Sinha C,
Wu YM, Serhan H, Verbal K, Thomas D, Hayes DF, Chinnaiyan AM, Baladandayuthapani V,
Heth J, Soellner MB, Merajver SD, Merrill N., Optimizing Precision Medicine for Breast
Cancer Brain Metastases with Functional Drug Response Assessment, Cancer Res Commun,
Cancer Res Commun. 2023 Jun 21;3(6):1093-1103. doi: 10.1158/2767-9764.CRC-22-0492.
eCollection 2023 Jun., PMID: 37377606, PMCID: PMC10284082, 10.1158/2767-9764.CRC-22-0492
Yao TH, Wu Z, Bharath K, Li J, Baladandayuthapani V., PROBABILISTIC LEARNING OF TREATMENT
TREES IN CANCER, Ann Appl Stat, Ann Appl Stat. 2023 Sep;17(3):1884-1908. doi: 10.1214/22-aoas1696.
Epub 2023 Sep 7., PMID: 37711665, PMCID: PMC10501503, 10.1214/22-aoas1696
Liu Q, Li G, Baladandayuthapani V., Pan-Cancer Drug Response Prediction Using Integrative
Principal Component Regression, bioRxiv, bioRxiv [Preprint]. 2023 Oct 5:2023.10.03.560366.
doi: 10.1101/2023.10.03.560366., PMID: 37873111, PMCID: PMC10592913, 10.1101/2023.10.03.560366
Panigrahi S, Mohammed S, Rao A, Baladandayuthapani V., Integrative Bayesian models
using Post-selective inference: A case study in radiogenomics, Biometrics, Biometrics.
2023 Sep;79(3):1801-1813. doi: 10.1111/biom.13740. Epub 2022 Aug 31., PMID: 35973786PMC9931934,
10.1111/biom.13740
Osher N, Kang J, Krishnan S, Rao A, Baladandayuthapani V., SPARTIN: a Bayesian method
for the quantification and characterization of cell type interactions in spatial pathology
data, Front Genet, Front Genet. 2023 May 18;14:1175603. doi: 10.3389/fgene.2023.1175603.
eCollection 2023., PMID: 37274781, PMCID: PMC10232864, 10.3389/fgene.2023.1175603
Mohammed S, Kurtek S, Bharath K, Rao A, Baladandayuthapani V., Tumor radiogenomics
in gliomas with Bayesian layered variable selection, Med Image Anal, Med Image Anal.
2023 Dec;90:102964. doi: 10.1016/j.media.2023.102964. Epub 2023 Sep 12., PMID: 37797481,
PMCID: PMC10653647, 10.1016/j.media.2023.102964
Masotti M, Osher N, Eliason J, Rao A, Baladandayuthapani V., DIMPLE: An R package
to quantify, visualize, and model spatial cellular interactions from multiplex imaging
with distance matrices, Patterns (N Y), Patterns (N Y). 2023 Nov 20;4(12):100879.
doi: 10.1016/j.patter.2023.100879. eCollection 2023 Dec 8., PMID: 38106614, PMCID:
PMC10724356, 10.1016/j.patter.2023.100879
Chen DW, Banerjee M, Xu T, Worden FP, Haymart MR., Real-World Use of Systemic Therapies
for the Treatment of Advanced Thyroid Cancers, Endocr Pract, Endocr Pract. 2023 Nov;29(11):868-874.
doi: 10.1016/j.eprac.2023.08.005. Epub 2023 Aug 23., PMID: 37619826, PMCID: , 10.1016/j.eprac.2023.08.005
Chen DW, Banerjee M, He X, Miranda L, Watanabe M, Veenstra CM, Haymart MR., Hidden
Disparities: How Language Influences Patients' Access to Cancer Care, J Natl Compr
Canc Netw, J Natl Compr Canc Netw. 2023 Sep;21(9):951-959.e1. doi: 10.6004/jnccn.2023.7037.,
PMID: 37673110, PMCID: PMC11033703, 10.6004/jnccn.2023.7037
Hirschtick JL, Cook S, Patel A, Barnes GD, Arenberg D, Bondarenko I, Levy DT, Jeon
J, Jimenez Mendoza E, Meza R, Fleischer NL., Longitudinal Associations Between Exclusive
and Dual Use of Electronic Nicotine Delivery Systems and Cigarettes and Self-Reported
Incident Diagnosed Cardiovascular Disease Among Adults, Nicotine Tob Res, Nicotine
Tob Res. 2023 Feb 9;25(3):386-394. doi: 10.1093/ntr/ntac182., PMID: 35907264, PMCID:
PMC9910147, 10.1093/ntr/ntac182
Sánchez-Romero LM, Bondarenko I, Knoll M, Hirschtick JL, Cook S, Fleischer NL, Levy
DT., Assessment of Electronic Nicotine Delivery Systems With Cigarette Use and Self-reported
Wheezing in the US Adult Population, JAMA Netw Open, JAMA Netw Open. 2023 Apr 3;6(4):e236247.
doi: 10.1001/jamanetworkopen.2023.6247., PMID: 37010872, PMCID: PMC10071334, 10.1001/jamanetworkopen.2023.6247
Cook S, Hirschtick JL, Barnes G, Arenberg D, Bondarenko I, Patel A, Jiminez Mendoza
E, Jeon J, Levy D, Meza R, Fleischer NL., Time-varying association between cigarette
and ENDS use on incident hypertension among US adults: a prospective longitudinal
study, BMJ Open, BMJ Open. 2023 Apr 21;13(4):e062297. doi: 10.1136/bmjopen-2022-062297.,
PMID: 37085311PMC10124226, 10.1136/bmjopen-2022-062297
Phillips TJ, Bond D, Takiar R, Kump K, Kandarpa M, Boonstra P, Mayer TL, Nachar V,
Wilcox RA, Carty SA, Karimi YH, Nikolovska-Coleska Z, Kaminski MS, Herrera AF, Maddocks
K, Popplewell L, Danilov AV., Adding venetoclax to lenalidomide and rituximab is safe
and effective in patients with untreated mantle cell lymphoma, Blood Adv, Blood Adv.
2023 Aug 22;7(16):4518-4527. doi: 10.1182/bloodadvances.2023009992., PMID: 37013954PMC10425679,
10.1182/bloodadvances.2023009992
Li G, Li Y, Chen K., It's all relative: Regression analysis with compositional predictors,
Biometrics, Biometrics. 2023 Jun;79(2):1318-1329. doi: 10.1111/biom.13703. Epub 2022
Jul 11., PMID: 35616500, PMCID: PMC9767704, 10.1111/biom.13703
Robien K, Clausen M, Sullo E, Ford YR, Griffith KA, Le D, Wickersham KE, Wallington
SF., Prevalence of Food Insecurity Among Cancer Survivors in the United States: A
Scoping Review, J Acad Nutr Diet, J Acad Nutr Diet. 2023 Feb;123(2):330-346. doi:
10.1016/j.jand.2022.07.004. Epub 2022 Jul 12., PMID: 35840079, 10.1016/j.jand.2022.07.004
Burns CJ, Russell CB, Griffith KA, Mangurian C, Johnson TRB, Jagsi R., Gender Differences
of Endowed Professorship in Obstetrics and Gynecology Departments at Top Academic
Institutions, J Womens Health (Larchmt), J Womens Health (Larchmt). 2023 Jan;32(1):39-46.
doi: 10.1089/jwh.2022.0060. Epub 2022 Sep 20., PMID: 36126297, PMCID: , 10.1089/jwh.2022.0060
Graff SL, Subbiah IM, Markham MJ, Matt-Amaral LB, Close JL, Griffith KA, Jagsi R.,
Frequency, barriers, outcomes, and consequences of reporting sexual harassment in
clinical oncology, JNCI Cancer Spectr, JNCI Cancer Spectr. 2023 Jan 3;7(1):pkac081.
doi: 10.1093/jncics/pkac081., PMID: 36416149, PMCID: PMC9808769, 10.1093/jncics/pkac081
Roubinov D, Griffith KA, Simone NL, Alvarez SE, Thomas M, Mangurian C, Jagsi R., Gender
Composition in Biomedical Research Grant Submissions and Grant Review Panels Before
Versus During the COVID-19 Pandemic, J Womens Health (Larchmt), J Womens Health (Larchmt).
2023 Apr;32(4):471-477. doi: 10.1089/jwh.2022.0188. Epub 2023 Feb 15., PMID: 36795988PMC10329151,
10.1089/jwh.2022.0188
Mohan A, Griffith KA, Wuchu F, Zhen DB, Kumar-Sinha C, Crysler O, Hsiehchen D, Enzler
T, Dippman D, Gunchick V, Achreja A, Animasahun O, Choppara S, Nenwani M, Chinnaiyan
AM, Nagrath D, Zalupski MM, Sahai V., Devimistat in Combination with Gemcitabine and
Cisplatin in Biliary Tract Cancer: Preclinical Evaluation and Phase Ib Multicenter
Clinical Trial (BilT-04), Clin Cancer Res, Clin Cancer Res. 2023 Jul 5;29(13):2394-2400.
doi: 10.1158/1078-0432.CCR-23-0036., PMID: 37115501, PMCID: PMC10330233, 10.1158/1078-0432.CCR-23-0036
Jagsi R, Suresh K, Krenz CD, Jones RD, Griffith KA, Perry L, Hawley ST, Zikmund-Fisher
B, Spector-Bagdady K, Platt J, De Vries R, Bradbury AR, Bansal P, Kaime M, Patel M,
Schilsky RL, Miller RS, Spence R., Health Data Sharing Perspectives of Patients Receiving
Care in CancerLinQ-Participating Oncology Practices, JCO Oncol Pract, JCO Oncol Pract.
2023 Aug;19(8):626-636. doi: 10.1200/OP.23.00080. Epub 2023 May 23., PMID: 37220315,
PMCID: PMC10424907, 10.1200/OP.23.00080
Odei BC, Herrera S, Huang C, Griffith KA, Bae J, Lastra AZ, Jagsi R., Portrayal of
Women as Physicians in Movies, 1990-2020, JAMA Intern Med, JAMA Intern Med. 2023 Oct
1;183(10):1168-1170. doi: 10.1001/jamainternmed.2023.2913., PMID: 37639238, PMCID:
PMC10463165, 10.1001/jamainternmed.2023.2913
Menke AJ, Henderson NC, Kouretas LC, Estenson AN, Janesko BG, Simanek EE., Computational
and Experimental Evidence for Templated Macrocyclization: The Role of a Hydrogen Bond
Network in the Quantitative Dimerization of 24-Atom Macrocycles, Molecules, Molecules.
2023 Jan 23;28(3):1144. doi: 10.3390/molecules28031144., PMID: 36770811, PMCID: PMC9921993,
10.3390/molecules28031144
Schwartz AR, Xu M, Henderson NC, Dela Cruz C, Pfau D, Padmanabhan V, Shikanov A, Moravek
MB., Impaired in vitro fertilization outcomes following testosterone treatment improve
with washout in a mouse model of gender-affirming hormone treatment, Am J Obstet Gynecol,
Am J Obstet Gynecol. 2023 Oct;229(4):419.e1-419.e10. doi: 10.1016/j.ajog.2023.07.013.
Epub 2023 Jul 13., PMID: 37453652, PMCID: PMC10654792, 10.1016/j.ajog.2023.07.013
Rutherford DV, Medley S, Henderson NC, Gersch CL, Vandenberg TA, Albain KS, Dakhil
SR, Tirumali NR, Gralow JR, Hortobagyi GN, Pusztai L, Mehta RS, Hayes DF, Kidwell
KM, Henry NL, Barlow WE, Rae JM, Hertz DL., Effects of CYP3A4 and CYP2C9 genotype
on systemic anastrozole and fulvestrant concentrations in SWOG S0226, Pharmacogenomics,
Pharmacogenomics. 2023 Aug;24(12):665-673. doi: 10.2217/pgs-2023-0097. Epub 2023 Aug
24., PMID: 37615099PMC10565537, 10.2217/pgs-2023-0097
Hwang C, Henderson NC, Chu SC, Holland B, Cackowski FC, Pilling A, Jang A, Rothstein
S, Labriola M, Park JJ, Ghose A, Bilen MA, Mustafa S, Kilari D, Pierro MJ, Thapa B,
Tripathi A, Garje R, Ravindra A, Koshkin VS, Hernandez E, Schweizer MT, Armstrong
AJ, McKay RR, Dorff TB, Alva AS, Barata PC., Biomarker-Directed Therapy in Black and
White Men With Metastatic Castration-Resistant Prostate Cancer, JAMA Netw Open, JAMA
Netw Open. 2023 Sep 5;6(9):e2334208. doi: 10.1001/jamanetworkopen.2023.34208., PMID:
37721753PMC10507489, 10.1001/jamanetworkopen.2023.34208
Her L, Shi J, Wang X, He B, Smith LS, Jiang H, Zhu HJ., Identification of regulatory
variants of carboxylesterase 1 (CES1): A proof-of-concept study for the application
of the Allele-Specific Protein Expression (ASPE) assay in identifying cis-acting regulatory
genetic polymorphisms, Proteomics, Proteomics. 2023 Jan;23(1):e2200176. doi: 10.1002/pmic.202200176.
Epub 2022 Dec 7., PMID: 36413357, PMCID: PMC10077986, 10.1002/pmic.202200176
Kaneshige A, Bai L, Wang M, McEachern D, Meagher JL, Xu R, Wang Y, Jiang W, Metwally
H, Kirchhoff PD, Zhao L, Jiang H, Wang M, Wen B, Sun D, Stuckey JA, Wang S., A selective
small-molecule STAT5 PROTAC degrader capable of achieving tumor regression in vivo,
Nat Chem Biol, Nat Chem Biol. 2023 Jun;19(6):703-711. doi: 10.1038/s41589-022-01248-4.
Epub 2023 Feb 2., PMID: 36732620, PMCID: , 10.1038/s41589-022-01248-4
Zhai J, Ji H, Jiang H., Reconstruction of Single-Cell Trajectories Using Stochastic
Tree Search, Genes (Basel), Genes (Basel). 2023 Jan 26;14(2):318. doi: 10.3390/genes14020318.,
PMID: 36833245PMC9957497, 10.3390/genes14020318
Shi Y, Shi W, Wang M, Lee JH, Kang H, Jiang H., Accurate and fast small p-value estimation
for permutation tests in high-throughput genomic data analysis with the cross-entropy
method, Stat Appl Genet Mol Biol, Stat Appl Genet Mol Biol. 2023 Aug 25;22(1). doi:
10.1515/sagmb-2021-0067. eCollection 2023 Jan 1., PMID: 37622330, PMCID: , 10.1515/sagmb-2021-0067
Wu X, Chen CW, Jaiswal S, Chang TS, Zhang R, Dame MK, Duan Y, Jiang H, Spence JR,
Hsieh SY, Wang TD., Near-Infrared Imaging of Colonic Adenomas In Vivo Using Orthotopic
Human Organoids for Early Cancer Detection, Cancers (Basel), Cancers (Basel). 2023
Sep 29;15(19):4795. doi: 10.3390/cancers15194795., PMID: 37835489, PMCID: PMC10571995,
10.3390/cancers15194795
Ludwig ML, Michmerhuizen NL, Wang J, Birkeland AC, Majchrowski BK, Nimmagadda S, Zhai
J, Bhangale A, Kulkarni A, Jiang H, Swiecicki PL, Brenner JC., Multi-kinase compensation
rescues EGFR knockout in a cell line model of head and neck squamous cell carcinoma,
Arch Oral Biol, Arch Oral Biol. 2023 Dec;156:105822. doi: 10.1016/j.archoralbio.2023.105822.
Epub 2023 Oct 11., PMID: 37844343, PMCID: PMC11209876, 10.1016/j.archoralbio.2023.105822
Lu S, Kim HS, Cao Y, Bedi K, Zhao L, Narayanan IV, Magnuson B, Gu Y, Yang J, Yi Z,
Babaniamansour S, Shameon S, Xu C, Paulsen MT, Qiu P, Jeyarajan S, Ljungman M, Thomas
D, Dou Y, Crawford H, di Magliano MP, Ge K, Yang B, Shi J., KMT2D links TGF-β signaling
to noncanonical activin pathway and regulates pancreatic cancer cell plasticity, Int
J Cancer, Int J Cancer. 2023 Aug 1;153(3):552-570. doi: 10.1002/ijc.34528. Epub 2023
May 4., PMID: 37140208PMC10330100, 10.1002/ijc.34528
Reese F, Williams B, Balderrama-Gutierrez G, Wyman D, Çelik MH, Rebboah E, Rezaie
N, Trout D, Razavi-Mohseni M, Jiang Y, Borsari B, Morabito S, Liang HY, McGill CJ,
Rahmanian S, Sakr J, Jiang S, Zeng W, Carvalho K, Weimer AK, Dionne LA, McShane A,
Bedi K, Elhajjajy SI, Upchurch S, Jou J, Youngworth I, Gabdank I, Sud P, Jolanki O,
Strattan JS, Kagda MS, Snyder MP, Hitz BC, Moore JE, Weng Z, Bennett D, Reinholdt
L, Ljungman M, Beer MA, Gerstein MB, Pachter L, Guigó R, Wold BJ, Mortazavi A., The
ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure
diversity, bioRxiv, bioRxiv [Preprint]. 2023 May 16:2023.05.15.540865. doi: 10.1101/2023.05.15.540865.,
PMID: 37292896, PMCID: PMC10245583, 10.1101/2023.05.15.540865
Kumaraswamy A, Duan Z, Flores D, Zhang C, Sehrawat A, Hu YM, Swaim OA, Rodansky E,
Storck WK, Kuleape JA, Bedi K, Mannan R, Wang XM, Udager A, Ravikumar V, Bankhead
A 3rd, Coleman I, Lee JK, Morrissey C, Nelson PS, Chinnaiyan AM, Rao A, Xia Z, Yates
JA, Alumkal JJ., LSD1 promotes prostate cancer reprogramming by repressing TP53 signaling
independently of its demethylase function, JCI Insight, JCI Insight. 2023 Aug 8;8(15):e167440.
doi: 10.1172/jci.insight.167440., PMID: 37440313, PMCID: PMC10445684, 10.1172/jci.insight.167440
Masotti M, Zhang L, Leng E, Metzger GJ, Koopmeiners JS., A novel Bayesian functional
spatial partitioning method with application to prostate cancer lesion detection using
MRI, Biometrics, Biometrics. 2023 Jun;79(2):604-615. doi: 10.1111/biom.13602. Epub
2021 Dec 8., PMID: 34806765, PMCID: PMC9306255, 10.1111/biom.13602
Morag Y, Ganesh Kumar N, Hamill JB, Cederna PS, Masotti M, Kemp SWP, Kung TA., Ultrasound
appearance of regenerative peripheral nerve interface with clinical correlation, Skeletal
Radiol, Skeletal Radiol. 2023 Jun;52(6):1137-1157. doi: 10.1007/s00256-022-04256-6.
Epub 2022 Dec 22., PMID: 36547677, PMCID: , 10.1007/s00256-022-04256-6
Gada KD, Xu Y, Winn BT, Masotti M, Kawano T, Vaananen H, Plant LD., Optogenetic dephosphorylation
of phosphatidylinositol 4,5 bisphosphate in Xenopus laevis oocytes, STAR Protoc, STAR
Protoc. 2023 Mar 17;4(1):102003. doi: 10.1016/j.xpro.2022.102003. Epub 2023 Jan 11.,
PMID: 36633950PMC9843251, 10.1016/j.xpro.2022.102003
Goutman SA, Boss J, Godwin C, Mukherjee B, Feldman EL, Batterman SA., Occupational
history associates with ALS survival and onset segment, Amyotroph Lateral Scler Frontotemporal
Degener, Amyotroph Lateral Scler Frontotemporal Degener. 2023 May;24(3-4):219-229.
doi: 10.1080/21678421.2022.2127324. Epub 2022 Oct 3., PMID: 36193557PMC10067530, 10.1080/21678421.2022.2127324
Goutman SA, Boss J, Iyer G, Habra H, Savelieff MG, Karnovsky A, Mukherjee B, Feldman
EL., Body mass index associates with amyotrophic lateral sclerosis survival and metabolomic
profiles, Muscle Nerve, Muscle Nerve. 2023 Mar;67(3):208-216. doi: 10.1002/mus.27744.
Epub 2022 Nov 18., PMID: 36321729, PMCID: PMC9957813, 10.1002/mus.27744
Peng MQ, Karvonen-Gutierrez CA, Herman WH, Mukherjee B, Park SK., Phthalate exposure
is associated with more rapid body fat gain in midlife women: The Study of Women's
Health Across the Nation (SWAN) Multi-Pollutant Study, Environ Res, Environ Res. 2023
Jan 1;216(Pt 3):114685. doi: 10.1016/j.envres.2022.114685. Epub 2022 Oct 28., PMID:
36341787, PMCID: PMC9870605, 10.1016/j.envres.2022.114685
Wang X, Bakulski KM, Mukherjee B, Hu H, Park SK., Predicting cumulative lead (Pb)
exposure using the Super Learner algorithm, Chemosphere, Chemosphere. 2023 Jan;311(Pt
2):137125. doi: 10.1016/j.chemosphere.2022.137125. Epub 2022 Nov 5., PMID: 36347347,
PMCID: PMC10160242, 10.1016/j.chemosphere.2022.137125
Phung MT, Webb PM, DeFazio A, Fereday S, Lee AW, Bowtell DDL, Fasching PA, Goode EL,
Goodman MT, Karlan BY, Lester J, Matsuo K, Modugno F, Brenton JD, Van Gorp T, Pharoah
PDP, Schildkraut JM, McLean K, Meza R, Mukherjee B, Richardson J, Grout B, Chase A,
McKinnon Deurloo C, Terry KL, Hanley GE, Pike MC, Berchuck A, Ramus SJ, Pearce CL;
Ovarian Cancer Association Consortium., Lifestyle and personal factors associated
with having macroscopic residual disease after ovarian cancer primary cytoreductive
surgery, Gynecol Oncol, Gynecol Oncol. 2023 Jan;168:68-75. doi: 10.1016/j.ygyno.2022.10.018.
Epub 2022 Nov 17., PMID: 36401943PMC10398872, 10.1016/j.ygyno.2022.10.018
Wang X, Ding N, Harlow SD, Randolph JF Jr, Mukherjee B, Gold EB, Park SK., Exposure
to heavy metals and hormone levels in midlife women: The Study of Women's Health Across
the Nation (SWAN), Environ Pollut, Environ Pollut. 2023 Jan 15;317:120740. doi: 10.1016/j.envpol.2022.120740.
Epub 2022 Nov 24., PMID: 36436662PMC9897061, 10.1016/j.envpol.2022.120740
Shi X, Li KQ, Mukherjee B., Current Challenges With the Use of Test-Negative Designs
for Modeling COVID-19 Vaccination and Outcomes, Am J Epidemiol, Am J Epidemiol. 2023
Feb 24;192(3):328-333. doi: 10.1093/aje/kwac203., PMID: 36446573, PMCID: PMC10372864,
10.1093/aje/kwac203
Du J, Zhou X, Clark-Boucher D, Hao W, Liu Y, Smith JA, Mukherjee B., Methods for large-scale
single mediator hypothesis testing: Possible choices and comparisons, Genet Epidemiol,
Genet Epidemiol. 2023 Mar;47(2):167-184. doi: 10.1002/gepi.22510. Epub 2022 Dec 8.,
PMID: 36465006PMC10329872, 10.1002/gepi.22510
Salvatore M, Hu MM, Beesley LJ, Mondul AM, Pearce CL, Friese CR, Fritsche LG, Mukherjee
B., COVID-19 Outcomes by Cancer Status, Site, Treatment, and Vaccination, Cancer Epidemiol
Biomarkers Prev, Cancer Epidemiol Biomarkers Prev. 2023 Jun 1;32(6):748-759. doi:
10.1158/1055-9965.EPI-22-0607., PMID: 36626383, 10.1158/1055-9965.EPI-22-0607
Kendrick DE, Thelen AE, Chen X, Gupta T, Yamazaki K, Krumm AE, Bandeh-Ahmadi H, Clark
M, Luckoscki J, Fan Z, Wnuk GM, Ryan AM, Mukherjee B, Hamstra SJ, Dimick JB, Holmboe
ES, George BC., Association of Surgical Resident Competency Ratings With Patient Outcomes,
Acad Med, Acad Med. 2023 Jul 1;98(7):813-820. doi: 10.1097/ACM.0000000000005157. Epub
2023 Feb 1., PMID: 36724304, PMCID: , 10.1097/ACM.0000000000005157
Peng MQ, Karvonen-Gutierrez CA, Herman WH, Mukherjee B, Park SK., Phthalates and Incident
Diabetes in Midlife Women: The Study of Women's Health Across the Nation (SWAN), J
Clin Endocrinol Metab, J Clin Endocrinol Metab. 2023 Jul 14;108(8):1947-1957. doi:
10.1210/clinem/dgad033., PMID: 36752637, PMCID: PMC10348472, 10.1210/clinem/dgad033
Fritsche LG, Jin W, Admon AJ, Mukherjee B., Characterizing and Predicting Post-Acute
Sequelae of SARS CoV-2 Infection (PASC) in a Large Academic Medical Center in the
US, J Clin Med, J Clin Med. 2023 Feb 7;12(4):1328. doi: 10.3390/jcm12041328., PMID:
36835863, PMCID: PMC9967320, 10.3390/jcm12041328
Ding N, Zheutlin E, Harlow SD, Randolph JF Jr, Mukherjee B, Park SK., Associations
Between Repeated Measures of Urinary Phthalate Metabolites With Hormones and Timing
of Natural Menopause, J Endocr Soc, J Endocr Soc. 2023 Feb 3;7(4):bvad024. doi: 10.1210/jendso/bvad024.
eCollection 2023 Feb 9., PMID: 36846211, PMCID: PMC9945847, 10.1210/jendso/bvad024
Ding N, Karvonen-Gutierrez CA, Zota AR, Mukherjee B, Harlow SD, Park SK., The role
of exposure to per- and polyfluoroalkyl substances in racial/ethnic disparities in
hypertension: Results from the study of Women's health across the nation, Environ
Res, Environ Res. 2023 Jun 15;227:115813. doi: 10.1016/j.envres.2023.115813. Epub
2023 Mar 31., PMID: 37004857, PMCID: PMC10227830, 10.1016/j.envres.2023.115813
Tejera CH, Ware E, Hicken M, Kobayashi L, Wang H, Adkins-Jackson P, Blostein F, Zawistowski
M, Mukherjee B, Bakulski K., The Mediating Role of Systemic Inflammation and Moderating
Role of Race/Ethnicity in Racialized Disparities in Incident Dementia: A Decomposition
Analysis, Res Sq, Res Sq [Preprint]. 2023 Apr 5:rs.3.rs-2753483. doi: 10.21203/rs.3.rs-2753483/v1.,
PMID: 37066239, PMCID: PMC10104251, 10.21203/rs.3.rs-2753483/v1
Zhuang Y, Kim NY, Fritsche LG, Mukherjee B, Lee S., Incorporating functional annotation
with bilevel continuous shrinkage for polygenic risk prediction, Res Sq, Res Sq [Preprint].
2023 Apr 12:rs.3.rs-2759690. doi: 10.21203/rs.3.rs-2759690/v1., PMID: 37090583PMC10120759,
10.21203/rs.3.rs-2759690/v1
Leis AM, Mathis MR, Kheterpal S, Zawistowski M, Mukherjee B, Pace N, O'Reilly-Shah
VN, Smith JA, Karvonen-Gutierrez CA., Cardiometabolic disease and obesity patterns
differentially predict acute kidney injury after total joint replacement: a retrospective
analysis, Br J Anaesth, Br J Anaesth. 2023 Jul;131(1):37-46. doi: 10.1016/j.bja.2023.04.001.
Epub 2023 May 13., PMID: 37188560PMC10308436, 10.1016/j.bja.2023.04.001
Phung MT, An PL, Vinh NN, Le HHTC, McLean K, Meza R, Mukherjee B, Lee AW, Pearce CL.,
A comparative study on behavior, awareness and belief about cervical cancer among
rural and urban women in Vietnam, PLOS Glob Public Health, PLOS Glob Public Health.
2023 Jun 6;3(6):e0001817. doi: 10.1371/journal.pgph.0001817. eCollection 2023., PMID:
37279208PMC10243615, 10.1371/journal.pgph.0001817
Higgins Tejera C, Ware EB, Kobayashi LC, Fu M, Hicken M, Zawistowski M, Mukherjee
B, Bakulski KM., Decomposing interaction and mediating effects of race/ethnicity and
circulating blood levels of cystatin C on cognitive status in the United States health
and retirement study, Front Hum Neurosci, Front Hum Neurosci. 2023 Jun 1;17:1052435.
doi: 10.3389/fnhum.2023.1052435. eCollection 2023., PMID: 37323925, PMCID: PMC10267311,
10.3389/fnhum.2023.1052435
Yu Y, Zhang M, Mukherjee B., An inverse probability weighted regression method that
accounts for right-censoring for causal inference with multiple treatments and a binary
outcome, Stat Med, Stat Med. 2023 Sep 10;42(20):3699-3715. doi: 10.1002/sim.9826.
Epub 2023 Jul 1., PMID: 37392070, PMCID: , 10.1002/sim.9826
Phung MT, Lee AW, McLean K, Anton-Culver H, Bandera EV, Carney ME, Chang-Claude J,
Cramer DW, Doherty JA, Fortner RT, Goodman MT, Harris HR, Jensen A, Modugno F, Moysich
KB, Pharoah PDP, Qin B, Terry KL, Titus LJ, Webb PM, Wu AH, Zeinomar N, Ziogas A,
Berchuck A, Cho KR, Hanley GE, Meza R, Mukherjee B, Pike MC, Pearce CL, Trabert B.,
A framework for assessing interactions for risk stratification models: the example
of ovarian cancer, J Natl Cancer Inst, J Natl Cancer Inst. 2023 Nov 8;115(11):1420-1426.
doi: 10.1093/jnci/djad137., PMID: 37436712, PMCID: PMC10637032, 10.1093/jnci/djad137
Kim C, Cathey AL, Watkins DJ, Mukherjee B, Rosario-Pabón ZY, Vélez-Vega CM, Alshawabkeh
AN, Cordero JF, Meeker JD., Adverse birth outcomes are associated with circulating
matrix metalloproteinases among pregnant women in Puerto Rico, J Reprod Immunol, J
Reprod Immunol. 2023 Sep;159:103991. doi: 10.1016/j.jri.2023.103991. Epub 2023 Jul
13., PMID: 37454540PMC10726844, 10.1016/j.jri.2023.103991
Kang H, Ding N, Karvonen-Gutierrez CA, Mukherjee B, Calafat AM, Park SK., Per- and
Polyfluoroalkyl Substances (PFAS) and Lipid Trajectories in Women 45-56 Years of Age:
The Study of Women's Health Across the Nation, Environ Health Perspect, Environ Health
Perspect. 2023 Aug;131(8):87004. doi: 10.1289/EHP12351. Epub 2023 Aug 8., PMID: 37552133,
PMCID: PMC10408595, 10.1289/EHP12351
Salvatore M, Clark-Boucher D, Fritsche LG, Ortlieb J, Houghtby J, Driscoll A, Caldwell-Larkins
B, Smith JA, Brummett CM, Kheterpal S, Lisabeth L, Mukherjee B., Epidemiologic Questionnaire
(EPI-Q) - a scalable, app-based health survey linked to electronic health record and
genotype data, Epidemiol Health, Epidemiol Health. 2023;45:e2023074. doi: 10.4178/epih.e2023074.
Epub 2023 Aug 8., PMID: 37591787, PMCID: PMC10867525, 10.4178/epih.e2023074
Bardhan R, Debnath R, Mukherjee B., Factor in gender to beat the heat in impoverished
settlements, Nature, Nature. 2023 Aug;620(7975):727. doi: 10.1038/d41586-023-02632-3.,
PMID: 37608008, PMCID: , 10.1038/d41586-023-02632-3
Siwakoti RC, Cathey A, Ferguson KK, Hao W, Cantonwine DE, Mukherjee B, McElrath TF,
Meeker JD., Prenatal per- and polyfluoroalkyl substances (PFAS) exposure in relation
to preterm birth subtypes and size-for-gestational age in the LIFECODES cohort 2006-2008,
Environ Res, Environ Res. 2023 Nov 15;237(Pt 2):116967. doi: 10.1016/j.envres.2023.116967.
Epub 2023 Aug 25., PMID: 37634691, PMCID: PMC10913455, 10.1016/j.envres.2023.116967
Golbus JR, Gupta K, Stevens R, Jeganathan VSE, Luff E, Shi J, Dempsey W, Boyden T,
Mukherjee B, Kohnstamm S, Taralunga V, Kheterpal V, Murphy S, Klasnja P, Kheterpal
S, Nallamothu BK., A randomized trial of a mobile health intervention to augment cardiac
rehabilitation, NPJ Digit Med, NPJ Digit Med. 2023 Sep 14;6(1):173. doi: 10.1038/s41746-023-00921-9.,
PMID: 37709933PMC10502072, 10.1038/s41746-023-00921-9
Clark-Boucher D, Zhou X, Du J, Liu Y, Needham BL, Smith JA, Mukherjee B., Methods
for mediation analysis with high-dimensional DNA methylation data: Possible choices
and comparisons, PLoS Genet, PLoS Genet. 2023 Nov 7;19(11):e1011022. doi: 10.1371/journal.pgen.1011022.
eCollection 2023 Nov., PMID: 37934796PMC10655967, 10.1371/journal.pgen.1011022
Suthar H, Manea T, Pak D, Woodbury M, Eick SM, Cathey A, Watkins DJ, Strakovsky RS,
Ryva BA, Pennathur S, Zeng L, Weller D, Park JS, Smith S, DeMicco E, Padula A, Fry
RC, Mukherjee B, Aguiar A, Dee Geiger S, Ng S, Huerta-Montanez G, Vélez-Vega C, Rosario
Z, Cordero JF, Zimmerman E, Woodruff TJ, Morello-Frosch R, Schantz SL, Meeker JD,
Alshawabkeh A, Aung MT., Cross-sectional associations between prenatal maternal per-
and poly-fluoroalkyl substances and bioactive lipids in three Environmental influences
on Child Health Outcomes (ECHO) cohorts, medRxiv, medRxiv [Preprint]. 2023 Nov 7:2023.11.03.23297930.
doi: 10.1101/2023.11.03.23297930., PMID: 37961525, PMCID: PMC10635258, 10.1101/2023.11.03.23297930
George BC, Thelen AE, Howard RA, Kendrick DE, Chen X, Clark MJ, Gupta T, Brown CS,
Bandeh-Ahmadi H, Luckoski JL, Wnuk GM, Fan Z, Krumm AE, Ryan AM, Buyske J, Mukherjee
B, Dimick JB., Evaluating Educational Outcomes Using Patient Outcomes of New Surgeons
Performing Partial Colectomy Compared to Cholecystectomy, Acad Med, Acad Med. 2023
Nov 1;98(11S):S143-S148. doi: 10.1097/ACM.0000000000005368. Epub 2023 Aug 1., PMID:
37983406, PMCID: , 10.1097/ACM.0000000000005368
Grieve R, Yang Y, Abbott S, Babu GR, Bhattacharyya M, Dean N, Evans S, Jewell N, Langan
SM, Lee W, Molenberghs G, Smeeth L, Williamson E, Mukherjee B., The importance of
investing in data, models, experiments, team science, and public trust to help policymakers
prepare for the next pandemic, PLOS Glob Public Health, PLOS Glob Public Health. 2023
Nov 30;3(11):e0002601. doi: 10.1371/journal.pgph.0002601. eCollection 2023., PMID:
38032861, PMCID: PMC10688710, 10.1371/journal.pgph.0002601
Jin W, Hao W, Shi X, Fritsche LG, Salvatore M, Admon AJ, Friese CR, Mukherjee B.,
Using Multi-Modal Electronic Health Record Data for the Development and Validation
of Risk Prediction Models for Long COVID Using the Super Learner Algorithm, J Clin
Med, J Clin Med. 2023 Nov 25;12(23):7313. doi: 10.3390/jcm12237313., PMID: 38068365,
PMCID: PMC10707399, 10.3390/jcm12237313
Fritsche LG, Nam K, Du J, Kundu R, Salvatore M, Shi X, Lee S, Burgess S, Mukherjee
B., Uncovering associations between pre-existing conditions and COVID-19 Severity:
A polygenic risk score approach across three large biobanks, PLoS Genet, PLoS Genet.
2023 Dec 19;19(12):e1010907. doi: 10.1371/journal.pgen.1010907. eCollection 2023 Dec.,
PMID: 38113267, PMCID: PMC10763941, 10.1371/journal.pgen.1010907
Meah S, Shi X, Fritsche LG, Salvatore M, Wagner A, Martin ET, Mukherjee B., Design
and analysis heterogeneity in observational studies of COVID-19 booster effectiveness:
A review and case study, Sci Adv, Sci Adv. 2023 Dec 22;9(51):eadj3747. doi: 10.1126/sciadv.adj3747.
Epub 2023 Dec 20., PMID: 38117882, PMCID: PMC10732535, 10.1126/sciadv.adj3747
Kundu R, Datta J, Ray D, Mishra S, Bhattacharyya R, Zimmermann L, Mukherjee B., Comparative
impact assessment of COVID-19 policy interventions in five South Asian countries using
reported and estimated unreported death counts during 2020-2021, PLOS Glob Public
Health, PLOS Glob Public Health. 2023 Dec 27;3(12):e0002063. doi: 10.1371/journal.pgph.0002063.
eCollection 2023., PMID: 38150465, PMCID: PMC10752546, 10.1371/journal.pgph.0002063
Morettin CE, Harthan JS, Huecker JB, Perera CD, Than T, Whiteside M, Johnson SD, Shorter
E, Migneco MK, Olson CK, Alferez CS, Camp D, Hartwick ATE, Gordon MO., Correlation
of Adenoviral Titers with Severity of Adenoviral Conjunctivitis and Time to Viral
Clearance for 21 Days, Optom Vis Sci, Optom Vis Sci. 2023 Mar 1;100(3):187-193. doi:
10.1097/OPX.0000000000001999. Epub 2023 Feb 7., PMID: 36749104PMC10038925, 10.1097/OPX.0000000000001999
Asokan A, Mace JC, Rice JD, Smith TL, Soler ZM, Ramakrishnan VR., Sex Differences
in Presentation and Surgical Outcomes From a Prospective Multicenter Chronic Rhinosinusitis
Study, Otolaryngol Head Neck Surg, Otolaryngol Head Neck Surg. 2023 Mar;168(3):491-500.
doi: 10.1177/01945998221102810. Epub 2023 Jan 29., PMID: 35639480, 10.1177/01945998221102810
Kleiboeker HL, Descourouez JL, Schulz LT, Mandelbrot DA, Odorico JS, Rice JP, Saddler
CM, Smith JA, Jorgenson MR., Maribavir for the Management of Cytomegalovirus in Adult
Transplant Recipients: A Review of the Literature and Practical Considerations, Ann
Pharmacother, Ann Pharmacother. 2023 May;57(5):597-608. doi: 10.1177/10600280221118959.
Epub 2022 Aug 24., PMID: 36003036, PMCID: , 10.1177/10600280221118959
Benjamin S, Schildkrout B, Smith TW, MacGillivray L, Adams CBL, Lauterbach MD, Rice
JF, Smock WS, Tucker DM., Life-long deficits in social adaptation and the frontal
lobes: New evidence, seventy-five years after Ackerly and Benton's landmark case report
of JP, Cortex, Cortex. 2023 Jan;158:4-23. doi: 10.1016/j.cortex.2022.08.006. Epub
2022 Oct 28., PMID: 36403380, PMCID: , 10.1016/j.cortex.2022.08.006
Searns JB, Rice JD, Bertin KB, Birkholz M, Barganier LB, Creech CB, Downes KJ, Hubbell
BB, Kronman MP, Rolsma SL, Sydney GI, O'Leary ST, Parker SK, Dominguez SR., Using
Administrative Billing Codes to Identify Acute Musculoskeletal Infections in Children,
Hosp Pediatr, Hosp Pediatr. 2023 Feb 1;13(2):182-195. doi: 10.1542/hpeds.2022-006821.,
PMID: 36601701, 10.1542/hpeds.2022-006821
Matthews LA, Musto JA, Deiss-Yehiely N, Daniel KE, Lightbourn C, Garvey M, Osman F,
Foley DP, Rice JR, Lucey MR., Psychosocial assessment in liver transplantation (LT):
an analysis of short-term outcomes, Hepatol Commun, Hepatol Commun. 2023 Jan 10;7(1):e0017.
doi: 10.1097/HC9.0000000000000017. eCollection 2023 Jan 1., PMID: 36633478, PMCID:
PMC9833439, 10.1097/HC9.0000000000000017
Hsu CC, Dodge JL, Weinberg E, Im G, Ko J, Davis W, Rutledge S, Dukewich M, Shoreibah
M, Aryan M, Vosooghi A, Lucey M, Rice J, Terrault NA, Lee BP., Multicentered study
of patient outcomes after declined for early liver transplantation in severe alcohol-associated
hepatitis, Hepatology, Hepatology. 2023 Apr 1;77(4):1253-1262. doi: 10.1097/HEP.0000000000000267.
Epub 2023 Jan 19., PMID: 36651183, PMCID: , 10.1097/HEP.0000000000000267
Burden M, Keniston A, Gundareddy VP, Kauffman R, Keach JW, McBeth L, Raffel KE, Rice
JD, Washburn C, Kisuule F., Discharge in the a.m.: A randomized controlled trial of
physician rounding styles to improve hospital throughput and length of stay, J Hosp
Med, J Hosp Med. 2023 Apr;18(4):302-315. doi: 10.1002/jhm.13060. Epub 2023 Feb 16.,
PMID: 36797598, PMCID: PMC10874597, 10.1002/jhm.13060
Douin DJ, Dylla L, Anderson EL, Rice JD, Jackson CL, Bebarta VS, Neumann RT, Schauer
SG, Ginde AA., Hyperoxia is associated with a greater risk for mortality in critically
ill traumatic brain injury patients than in critically ill trauma patients without
brain injury, Sci Prog, Sci Prog. 2023 Jan-Mar;106(1):368504231160416. doi: 10.1177/00368504231160416.,
PMID: 36879502, PMCID: PMC10450323, 10.1177/00368504231160416
Williams JTB, Robinson K, Abbott E, Rojop N, Shiffman M, Rice JD, O'Leary ST, Asturias
EJ., Community perceptions of vaccine advocacy for children under five in rural Guatemala,
PLOS Glob Public Health, PLOS Glob Public Health. 2023 May 22;3(5):e0000728. doi:
10.1371/journal.pgph.0000728. eCollection 2023., PMID: 37216324, PMCID: PMC10202271,
10.1371/journal.pgph.0000728
Hawk TE, Piya S, Zadegan SB, Li P, Rice JH, Hewezi T., The soybean immune receptor
GmBIR1 regulates host transcriptome, spliceome, and immunity during cyst nematode
infection, New Phytol, New Phytol. 2023 Sep;239(6):2335-2352. doi: 10.1111/nph.19087.
Epub 2023 Jun 20., PMID: 37337845, PMCID: , 10.1111/nph.19087
Johnson EC, Salvatore JE, Lai D, Merikangas AK, Nurnberger JI, Tischfield JA, Xuei
X, Kamarajan C, Wetherill L; COGA Collaborators; Rice JP, Kramer JR, Kuperman S, Foroud
T, Slesinger PA, Goate AM, Porjesz B, Dick DM, Edenberg HJ, Agrawal A., The collaborative
study on the genetics of alcoholism: Genetics, Genes Brain Behav, Genes Brain Behav.
2023 Oct;22(5):e12856. doi: 10.1111/gbb.12856. Epub 2023 Jun 30., PMID: 37387240,
PMCID: PMC10550788, 10.1111/gbb.12856
Jiang Z, Zhang T, Han W, Xiao J, Zhang W, Wang X, Liu J, Yang Y, Yang C, Guan F, Li
T, Rice JP., Identification of PROK2 gene polymorphisms as predictors of methamphetamine
use disorder risk and indicators of craving scale in the Chinese Han population, Front
Pharmacol, Front Pharmacol. 2023 Jul 6;14:1217382. doi: 10.3389/fphar.2023.1217382.
eCollection 2023., PMID: 37484015PMC10356980, 10.3389/fphar.2023.1217382
Jorgenson MR, Descourouez JL, Saddler CM, Smith JA, Odorico JS, Rice JP, Mandelbrot
DA., Real world experience with conversion from valganciclovir to letermovir for cytomegalovirus
prophylaxis: Letermovir reverses leukopenia and avoids mycophenolate dose reduction,
Clin Transplant, Clin Transplant. 2023 Dec;37(12):e15142. doi: 10.1111/ctr.15142.
Epub 2023 Sep 27., PMID: 37755141, 10.1111/ctr.15142
Yaseen NR, Barnes CLK, Sun L, Takeda A, Rice JP., Genetics of vegetarianism: A genome-wide
association study, PLoS One, PLoS One. 2023 Oct 4;18(10):e0291305. doi: 10.1371/journal.pone.0291305.
eCollection 2023., PMID: 37792698PMC10550162, 10.1371/journal.pone.0291305
Dylla L, Douin DJ, Cwik JE, Steinwand A, Rice JD, Jackson CL, Anderson EL, Higgins
HM, Monte AA, Ginde AA., Provider Perceptions of Oxygenation Strategies for Critically
Ill Trauma Patients With and Without Moderate-to-Severe Traumatic Brain Injury, Mil
Med, Mil Med. 2023 Nov 8;188(Suppl 6):166-175. doi: 10.1093/milmed/usad076., PMID:
37948260PMC11022338, 10.1093/milmed/usad076
Benjamin WJ, Wang K, Zarins K, Bellile E, Blostein F, Argirion I, Taylor JMG, D'Silva
NJ, Chinn SB, Rifkin S, Sartor MA, Rozek LS., Oral Microbiome Community Composition
in Head and Neck Squamous Cell Carcinoma, Cancers (Basel), Cancers (Basel). 2023 Apr
29;15(9):2549. doi: 10.3390/cancers15092549., PMID: 37174014, PMCID: PMC10177240,
10.3390/cancers15092549
Carney SV, Banerjee K, Mujeeb A, Zhu B, Haase S, Varela ML, Kadiyala P, Tronrud CE,
Zhu Z, Mukherji D, Gorla P, Sun Y, Tagett R, Núñez FJ, Luo M, Luo W, Ljungman M, Liu
Y, Xia Z, Schwendeman A, Qin T, Sartor MA, Costello JF, Cahill DP, Lowenstein PR,
Castro MG., Zinc Finger MYND-Type Containing 8 (ZMYND8) Is Epigenetically Regulated
in Mutant Isocitrate Dehydrogenase 1 (IDH1) Glioma to Promote Radioresistance, Clin
Cancer Res, Clin Cancer Res. 2023 May 1;29(9):1763-1782. doi: 10.1158/1078-0432.CCR-22-1896.,
PMID: 36692427PMC10159884, 10.1158/1078-0432.CCR-22-1896
Lee S, Deng L, Wang Y, Wang K, Sartor MA, Wang XS., IndepthPathway: an integrated
tool for in-depth pathway enrichment analysis based on single-cell sequencing data,
Bioinformatics, Bioinformatics. 2023 Jun 1;39(6):btad325. doi: 10.1093/bioinformatics/btad325.,
PMID: 37243667PMC10275909, 10.1093/bioinformatics/btad325
Petroff RL, Cavalcante RG, Colacino JA, Goodrich JM, Jones TR, Lalancette C, Morgan
RK, Neier K, Perera BPU, Rygiel CA, Svoboda LK, Wang K, Sartor MA, Dolinoy DC., Developmental
exposures to common environmental contaminants, DEHP and lead, alter adult brain and
blood hydroxymethylation in mice, Front Cell Dev Biol, Front Cell Dev Biol. 2023 Jun
13;11:1198148. doi: 10.3389/fcell.2023.1198148. eCollection 2023., PMID: 37384255PMC10294071,
10.3389/fcell.2023.1198148
Garcia-Fabiani MB, Haase S, Banerjee K, McClellan B, Zhu Z, Mujeeb A, Li Y, Yu J,
Kadiyala P, Taher A, Núñez FJ, Alghamri MS, Comba A, Mendez FM, Nicola Candia AJ,
Salazar B, Koschmann C, Nunez FM, Edwards M, Qin T, Sartor MA, Lowenstein PR, Castro
MG., H3.3-G34R Mutation-Mediated Epigenetic Reprogramming Leads to Enhanced Efficacy
of Immune Stimulatory Gene Therapy in Pediatric High-Grade Gliomas, bioRxiv, bioRxiv
[Preprint]. 2023 Jun 13:2023.06.13.544658. doi: 10.1101/2023.06.13.544658., PMID:
37398299PMC10312611, 10.1101/2023.06.13.544658
Qin T, Li S, Henry LE, Chou E, Cavalcante RG, Garb BF, D'Silva NJ, Rozek LS, Sartor
MA., Whole-genome CpG-resolution DNA Methylation Profiling of HNSCC Reveals Distinct
Mechanisms of Carcinogenesis for Fine-scale HPV+ Cancer Subtypes, Cancer Res Commun,
Cancer Res Commun. 2023 Aug 30;3(8):1701-1715. doi: 10.1158/2767-9764.CRC-23-0009.
eCollection 2023 Aug., PMID: 37654626PMC10467604, 10.1158/2767-9764.CRC-23-0009
Morgan RK, Wang K, Svoboda LK, Rygiel CA, Lalancette C, Cavalcante R, Bartolomei MS,
Prasasya R, Neier K, Perera BPU, Jones TR, Colacino JA, Sartor MA, Dolinoy DC., Effects
of Developmental Lead and Phthalate Exposures on DNA Methylation in Adult Mouse Blood,
Brain, and Liver Identifies Tissue- and Sex-Specific Changes with Implications for
Genomic Imprinting, bioRxiv, bioRxiv [Preprint]. 2023 Oct 10:2023.09.29.560131. doi:
10.1101/2023.09.29.560131., PMID: 37873115PMC10592650, 10.1101/2023.09.29.560131
Medeiros MC, The S, Bellile E, Russo N, Schmitd L, Danella E, Singh P, Banerjee R,
Bassis C, Murphy GR 3rd, Sartor MA, Lombaert I, Schmidt TM, Eisbruch A, Murdoch-Kinch
CA, Rozek L, Wolf GT, Li G, Chen GY, D'Silva NJ., Salivary microbiome changes distinguish
response to chemoradiotherapy in patients with oral cancer, Microbiome, Microbiome.
2023 Nov 30;11(1):268. doi: 10.1186/s40168-023-01677-w., PMID: 38037123PMC10687843,
10.1186/s40168-023-01677-w
Allen SG, Rosen BS, Aryal M, Cao Y, Schipper MJ, Wong KK, Casper KA, Chinn SB, Malloy
KM, Prince ME, Rosko AJ, Shuman AG, Spector ME, Stucken CL, Swiecicki PL, Worden FP,
Brenner JC, Schonewolf CA, Elliott DA, Mierzwa ML, Shah JL., Initial Feasibility and
Acute Toxicity Outcomes From a Phase 2 Trial of (18)F-Fluorodeoxyglucose Positron
Emission Tomography Response-Based De-escalated Definitive Chemoradiotherapy for p16+
Oropharynx Cancer: A Planned Interim Analysis, Int J Radiat Oncol Biol Phys, Int J
Radiat Oncol Biol Phys. 2023 Sep 1;117(1):171-180. doi: 10.1016/j.ijrobp.2023.03.043.
Epub 2023 Mar 16., PMID: 36931572, 10.1016/j.ijrobp.2023.03.043
Peterson AB, Wang C, Wong KK, Frey KA, Muzik O, Schipper MJ, Dewaraja YK., 177Lu-DOTATATE
Theranostics: Predicting Renal Dosimetry From Pretherapy 68Ga-DOTATATE PET and Clinical
Biomarkers, Clin Nucl Med, Clin Nucl Med. 2023 May 1;48(5):393-399. doi: 10.1097/RLU.0000000000004599.
Epub 2023 Feb 8., PMID: 37010563, PMCID: PMC10353839, 10.1097/RLU.0000000000004599
Allen SG, Dragovic AF, Yin HM, Bryant AK, Paximadis PA, Matuszak MM, Schipper MJ,
Dess RT, Hayman JA, Dominello MM, Kestin LL, Movsas B, Jolly S, Bergsma DP; Michigan
Radiation Oncology Quality Consortium., Prospective Evaluation of Limited-Stage Small
Cell Lung Cancer Radiotherapy Fractionation Regimen Usage and Acute Toxicity in a
Large Statewide Quality Collaborative, Pract Radiat Oncol, Pract Radiat Oncol. 2023
Sep-Oct;13(5):444-453. doi: 10.1016/j.prro.2023.04.007. Epub 2023 Apr 24., PMID: 37100388,
PMCID: , 10.1016/j.prro.2023.04.007
Gharzai LA, Wang C, Tang M, Jackson WC, Maurino C, Cousins MM, Mendiratta-Lala M,
Parikh ND, Mayo CS, Haken RKT, Owen D, Cuneo KC, Schipper MJ, Lawrence TS., Efficacy
of a Second Course of Radiation for Patients With Metachronous Hepatocellular Carcinoma,
Pract Radiat Oncol, Pract Radiat Oncol. 2023 Nov-Dec;13(6):e504-e514. doi: 10.1016/j.prro.2023.05.008.
Epub 2023 Jun 8., PMID: 37295727, PMCID: , 10.1016/j.prro.2023.05.008
Lawrence TS, Aryal MP, Evans JR, Cuneo KC, Chang DT, Schipper MJ, Zhang Y, Balter
JM, Haken RKT, Cao Y., Does Vascular Collapse Occur After Treatment of Hepatocellular
Cancer With Stereotactic Body Radiation Therapy?, Int J Radiat Oncol Biol Phys, Int
J Radiat Oncol Biol Phys. 2023 Dec 1;117(5):1236-1240. doi: 10.1016/j.ijrobp.2023.06.078.
Epub 2023 Jul 4., PMID: 37414260, PMCID: , 10.1016/j.ijrobp.2023.06.078
Wang C, Peterson AB, Wong KK, Roseland ME, Schipper MJ, Dewaraja YK., Single-Time-Point
Imaging for Dosimetry After [(177)Lu]Lu-DOTATATE: Accuracy of Existing Methods and
Novel Data-Driven Models for Reducing Sensitivity to Time-Point Selection, J Nucl
Med, J Nucl Med. 2023 Sep;64(9):1463-1470. doi: 10.2967/jnumed.122.265338. Epub 2023
Jul 27., PMID: 37500260, PMCID: PMC10478823, 10.2967/jnumed.122.265338
Das R, Abbott MR, Hadley SW, Sahai V, Bednar F, Evans JR, Schipper MJ, Lawrence TS,
Cuneo KC., Predictors of Acute and Late Toxicity in Patients Receiving Chemoradiation
for Unresectable Pancreatic Cancer, Adv Radiat Oncol, Adv Radiat Oncol. 2023 May 6;8(6):101266.
doi: 10.1016/j.adro.2023.101266. eCollection 2023 Nov-Dec., PMID: 38047228PMC10692286,
10.1016/j.adro.2023.101266
Gharzai LA, Jiang R, Jaworski EM, Morales Rivera K, Dess RT, Jackson WC, Hartman HE,
Mehra R, Kishan AU, Solanki AA, Schaeffer EM, Feng FY, Zaorsky NG, Berlin A, Ponsky
L, Shoag J, Sun Y, Schipper MJ, Garcia J, Spratt DE., Meta-Analysis of Candidate Surrogate
End Points in Advanced Prostate Cancer, NEJM Evid, NEJM Evid. 2023 Apr;2(4):EVIDoa2200195.
doi: 10.1056/EVIDoa2200195. Epub 2023 Mar 27., PMID: 38320030, 10.1056/EVIDoa2200195
O'Dwyer MC, Furgal A, Furst W, Ramakrishnan M, Capizzano N, Sen A, Klinkman M., The
Prevalence of Periodontitis Among US Adults with Multimorbidity Using NHANES Data
2011-2014, J Am Board Fam Med, J Am Board Fam Med. 2023 Apr 3;36(2):313-324. doi:
10.3122/jabfm.2022.220207R1. Epub 2023 Mar 3., PMID: 36868869, PMCID: , 10.3122/jabfm.2022.220207R1
Roberts EK, Elliott MR, Taylor JMG., Solutions for surrogacy validation with longitudinal
outcomes for a gene therapy, Biometrics, Biometrics. 2023 Sep;79(3):1840-1852. doi:
10.1111/biom.13720. Epub 2022 Jul 25., PMID: 35833874, PMCID: , 10.1111/biom.13720
Benjamin WJ, Yalamanchi P, Taylor JMG, Lenze N, Worden FP, Chinn SB, Chen MM., Impact
of monoclonal antibody therapy for head and neck cancer on end-of-life care utilization
and costs, Head Neck, Head Neck. 2023 Jun;45(6):1468-1475. doi: 10.1002/hed.27359.
Epub 2023 Mar 28., PMID: 36976786, PMCID: PMC10314811, 10.1002/hed.27359
Abbott MR, Beesley LJ, Bellile EL, Shuman AG, Rozek LS, Taylor JMG., Comparing Individualized
Survival Predictions From Random Survival Forests and Multistate Models in the Presence
of Missing Data: A Case Study of Patients With Oropharyngeal Cancer, Cancer Inform,
Cancer Inform. 2023 Jun 29;22:11769351231183847. doi: 10.1177/11769351231183847. eCollection
2023., PMID: 37426052, PMCID: PMC10328055, 10.1177/11769351231183847
Shafie Khorassani F, Taylor JMG, Kaciroti N, Elliott MR., Incorporating Covariates
into Measures of Surrogate Paradox Risk, Stats (Basel), Stats (Basel). 2023 Mar;6(1):322-344.
doi: 10.3390/stats6010020. Epub 2023 Feb 17., PMID: 37885610, PMCID: PMC10602018,
10.3390/stats6010020
Perez-Pacheco C, Schmitd LB, Furgal A, Bellile EL, Liu M, Fattah A, Gonzalez-Maldonado
L, Unsworth SP, Wong SY, Rozek LS, Rao A, Wolf GT, Taylor JMG, Casper K, Mierzwa M,
D'Silva NJ., Increased Nerve Density Adversely Affects Outcome in Oral Cancer, Clin
Cancer Res, Clin Cancer Res. 2023 Jul 5;29(13):2501-2512. doi: 10.1158/1078-0432.CCR-22-3496.,
PMID: 37039710, PMCID: PMC10371054, 10.1158/1078-0432.CCR-22-3496
Gu T, Taylor JMG, Mukherjee B., A meta-inference framework to integrate multiple external
models into a current study, Biostatistics, Biostatistics. 2023 Apr 14;24(2):406-424.
doi: 10.1093/biostatistics/kxab017., PMID: 34269371, PMCID: PMC10102901, 10.1093/biostatistics/kxab017
Gu T, Taylor JMG, Mukherjee B., A synthetic data integration framework to leverage
external summary-level information from heterogeneous populations, Biometrics, Biometrics.
2023 Dec;79(4):3831-3845. doi: 10.1111/biom.13852. Epub 2023 Apr 4., PMID: 36876883,
PMCID: PMC10480346, 10.1111/biom.13852
Han P, Taylor JMG, Mukherjee B., Integrating Information from Existing Risk Prediction
Models with No Model Details, Can J Stat, Can J Stat. 2023 Jun;51(2):355-374. doi:
10.1002/cjs.11701. Epub 2022 Apr 15., PMID: 37346757, PMCID: PMC10281716, 10.1002/cjs.11701
Benjamin WJ, Wang K, Zarins K, Bellile E, Blostein F, Argirion I, Taylor JMG, D'Silva
NJ, Chinn SB, Rifkin S, Sartor MA, Rozek LS., Oral Microbiome Community Composition
in Head and Neck Squamous Cell Carcinoma, Cancers (Basel), Cancers (Basel). 2023 Apr
29;15(9):2549. doi: 10.3390/cancers15092549., PMID: 37174014PMC10177240, 10.3390/cancers15092549
Speers CW, Symmans WF, Barlow WE, Trevarton A, The S, Du L, Rae JM, Shak S, Baehner
R, Sharma P, Pusztai L, Hortobagyi GN, Hayes DF, Albain KS, Godwin A, Thompson A.,
Evaluation of the Sensitivity to Endocrine Therapy Index and 21-Gene Breast Recurrence
Score in the SWOG S8814 Trial, J Clin Oncol, J Clin Oncol. 2023 Apr 1;41(10):1841-1848.
doi: 10.1200/JCO.22.01499. Epub 2023 Jan 17., PMID: 36649570PMC10082279, 10.1200/JCO.22.01499
Carpenter ES, Elhossiny AM, Kadiyala P, Li J, McGue J, Griffith BD, Zhang Y, Edwards
J, Nelson S, Lima F, Donahue KL, Du W, Bischoff AC, Alomari D, Watkoske HR, Mattea
M, The S, Espinoza CE, Barrett M, Sonnenday CJ, Olden N, Chen CT, Peterson N, Gunchick
V, Sahai V, Rao A, Bednar F, Shi J, Frankel TL, Pasca di Magliano M., Analysis of
Donor Pancreata Defines the Transcriptomic Signature and Microenvironment of Early
Neoplastic Lesions, Cancer Discov, Cancer Discov. 2023 Jun 2;13(6):1324-1345. doi:
10.1158/2159-8290.CD-23-0013., PMID: 37021392PMC10236159, 10.1158/2159-8290.CD-23-0013
The S, Schnepp PM, Shelley G, Keller JM, Rao A, Keller ET., Integration of Single-Cell
RNA-Sequencing and Network Analysis to Investigate Mechanisms of Drug Resistance,
Methods Mol Biol, Methods Mol Biol. 2023;2660:85-94. doi: 10.1007/978-1-0716-3163-8_7.,
PMID: 37191792PMC10600594, 10.1007/978-1-0716-3163-8_7
Hassett AL, Williams DA, Harris RE, Harte SE, Kaplan CM, Schrepf A, Kratz AL, Brummett
CM, Kidwell KM, Tsodikov A, Shaikh S, Murphy SL, Lobo R, King A, Favorite T, Fisher
L, Golmirzaie GM, Kohns DJ, Schneiderhan JR, Mawla I, Ichesco E, McAfee J, Wasserman
RA, Banner E, Scott KA, Cole C, Clauw DJ., An Interventional Response Phenotyping
Study in Chronic Low Back Pain: Protocol for a Mechanistic Randomized Controlled Trial,
Pain Med, Pain Med. 2023 Aug 4;24(Suppl 1):S126-S138. doi: 10.1093/pm/pnad005., PMID:
36708026PMC10403311, 10.1093/pm/pnad005
Zuo Y, Navaz S, Tsodikov A, Kmetova K, Kluge L, Ambati A, Hoy CK, Yalavarthi S, de
Andrade D, Tektonidou MG, Sciascia S, Pengo V, Ruiz-Irastorza G, Belmont HM, Gerosa
M, Fortin PR, de Jesus GR, Branch DW, Andreoli L, Rodriguez-Almaraz E, Petri M, Cervera
R, Willis R, Karp DR, Li QZ, Cohen H, Bertolaccini ML, Erkan D, Knight JS; Antiphospholipid
Syndrome Alliance for Clinical Trials and InternatiOnal Networking., Anti-Neutrophil
Extracellular Trap Antibodies in Antiphospholipid Antibody-Positive Patients: Results
From the Antiphospholipid Syndrome Alliance for Clinical Trials and InternatiOnal
Networking Clinical Database and Repository, Arthritis Rheumatol, Arthritis Rheumatol.
2023 Aug;75(8):1407-1414. doi: 10.1002/art.42489. Epub 2023 May 18., PMID: 36862141,
PMCID: PMC10758259, 10.1002/art.42489
Herr DJ, Elliott DA, Duchesne G, Stensland KD, Caram MEV, Chapman C, Burns JA, Hollenbeck
BK, Sparks JB, Shin C, Zaslavsky A, Tsodikov A, Skolarus TA., Outcomes after definitive
radiation therapy for localized prostate cancer in a national health care delivery
system, Cancer, Cancer. 2023 Oct 15;129(20):3326-3333. doi: 10.1002/cncr.34916. Epub
2023 Jun 30., PMID: 37389814PMC10528965, 10.1002/cncr.34916
Gulati R, Nyame YA, Lange JM, Shoag JE, Tsodikov A, Etzioni R., Racial disparities
in prostate cancer mortality: a model-based decomposition of contributing factors,
J Natl Cancer Inst Monogr, J Natl Cancer Inst Monogr. 2023 Nov 8;2023(62):212-218.
doi: 10.1093/jncimonographs/lgad018., PMID: 37947332, PMCID: PMC10637024, 10.1093/jncimonographs/lgad018
Caissie A, Mierzwa M, Fuller CD, Rajaraman M, Lin A, MacDonald A, Popple R, Xiao Y,
VanDijk L, Balter P, Fong H, Xu H, Kovoor M, Lee J, Rao A, Martel M, Thompson R, Merz
B, Yao J, Mayo C., Head and Neck Radiation Therapy Patterns of Practice Variability
Identified as a Challenge to Real-World Big Data: Results From the Learning from Analysis
of Multicentre Big Data Aggregation (LAMBDA) Consortium, Adv Radiat Oncol, Adv Radiat
Oncol. 2022 Feb 23;8(1):100925. doi: 10.1016/j.adro.2022.100925. eCollection 2023
Jan-Feb., PMID: 36711064, PMCID: PMC9873496, 10.1016/j.adro.2022.100925
Flynn A, Taksler G, Caverly T, Beck A, Boisvert P, Boonstra P, Gittlen N, Meng G,
Raths B, Friedman CP., CBK model composition using paired web services and executable
functions: A demonstration for individualizing preventive services, Learn Health Syst,
Learn Health Syst. 2022 Aug 3;7(2):e10325. doi: 10.1002/lrh2.10325. eCollection 2023
Apr., PMID: 37066102, PMCID: PMC10091204, 10.1002/lrh2.10325
Taylor JMG, Choi K, Han P., Data integration: exploiting ratios of parameter estimates
from a reduced external model, Biometrika, Biometrika. 2022 Apr 12;110(1):119-134.
doi: 10.1093/biomet/asac022. eCollection 2023 Mar., PMID: 36798840, PMCID: PMC9919493,
10.1093/biomet/asac022
Sexton JZ, Fursmidt R, O’Meara MJ, Omta W, Rao A, Egan DA, Haney SA., Machine Learning
and Assay Development for Image-based Phenotypic Profiling of Drug Treatments, Assay
Guidance Manual, 2023 Mar 15. In: Markossian S, Grossman A, Arkin M, Auld D, Austin
C, Baell J, Brimacombe K, Chung TDY, Coussens NP, Dahlin JL, Devanarayan V, Foley
TL, Glicksman M, Gorshkov K, Haas JV, Hall MD, Hoare S, Inglese J, Iversen PW, Lal-Nag
M, Li Z, Manro JR, McGee J, McManus O, Pearson M, Riss T, Saradjian P, Sittampalam
GS, Tarselli M, Trask OJ Jr, Weidner JR, Wildey MJ, Wilson K, Xia M, Xu X, editors.
Assay Guidance Manual [Internet]. Bethesda (MD): Eli Lilly & Company and the National
Center for Advancing Translational Sciences; 2004–., PMID: 36921077, PMCID: ,
Bhayana S, Zhao Y, Merchant M, Cummins T, Dougherty JA, Kamigaki Y, Pathmasiri W,
McRitchie S, Mariani LH, Sumner S, Klein JB, Li L, Smoyer WE; Pediatric Nephrology
Research Consortium., Multiomics Analysis of Plasma Proteomics and Metabolomics of
Steroid Resistance in Childhood Nephrotic Syndrome Using a "Patient-Specific" Approach,
, Kidney Int Rep. 2023 Mar 23;8(6):1239-1254. doi: 10.1016/j.ekir.2023.03.015. eCollection
2023 Jun., PMID: 37284673, PMCID: PMC10239920, 10.1016/j.ekir.2023.03.015
Liu J, Zhao Y, He D, Jones KM, Tang S, Allison DB, Zhang Y, Chen J, Zhang Q, Wang
X, Li C, Wang C, Li L, Liu X., A kinome-wide CRISPR screen identifies CK1α as a target
to overcome enzalutamide resistance of prostate cancer, , Cell Rep Med. 2023 Apr 18;4(4):101015.
doi: 10.1016/j.xcrm.2023.101015., PMID: 37075701, PMCID: PMC10140619, 10.1016/j.xcrm.2023.101015
Stensland et al, Better Understanding the Timing Of Androgen Deprivation Trial Outcomes:
Impacts of Prior Androgen Deprivation Therapy, JNCI Cancer Spectr, 2022 May 2;6(3):pkac025.,
PMID: 35616109, PMCID: PMC9134272, doi: 10.1093/jncics/pkac025
Vo J, Wu Y, Mishler J, Hall S, Mannan R, Waqng L, Ning Y Zhau J, Hopkins A, Estill
J, Chan W, Yesel J, Cao X, Rao A, Tsodikov A, Talpaz M, Cole C Ye J, Auclair D, Cho
H, Robinson D, Chinnaiyan, The genetic heterogeneity and drug resistance mechanisms
of relapsed refractory multiple myeloma, Nature Communications, 2022 Jun 29;13(1):3750,
PMID: 35768438, PMCID: PMC9243087, doi: 10.1038/s41467-022-31430-0
Harper D, Plegue M, Jimbo M, Gorin S, Sen A, US women screen at low rates for both
cervical and colorectal cancers than a single cancer: a cross-sectional population-based
observational study, Elife, 2022 Jun 28;11:e76070, PMID: 35762572, PMCID: PMC9239676,
doi: 10.7554/eLife.76070
Waljee A, Weinheimer-Hau E, Abubakar A, Ngugi A, Siwo G, Kwakye G, Singal A, Rao A,
Saini S, Read A, Baker J, Balis U, Opio C, Zhu J, Saleh M, Artificial intelligence
and machine learning for early detection and diagnosis of colorectal cancer in sub-Saharan
Africa, Gut, 2022 Jul;71(7):1259-1265, PMID: 35418482, PMCID: PMC9177787, doi: 10.1136/gutjnl-2022-327211
Krishnan S, Mohammed S, Frankel T, Rao A, GaWRDenMap: a quantitative framework to
study the local variation in cell-cell interactions in pancreatic disease subtypes,
Sci Rep, 2022 Mar 8;12(1):3708, PMID: 35260589, PMCID: PMC8904504, doi: 10.1038/s41598-022-06602-z
Najem et al, Central nervous system immune interactome is a function of cancer lineage,
tumor microenvironment, and STAT3 expression, JCI Insight, 2022 May 9;7(9):e157612,
PMID: 35316217, PMCID: PMC9090258, doi: 10.1172/jci.insight.157612
Abousamra et al, Deep Learning-Based Mapping of Tumor Infiltrating Lymphocytes in
Whole Slide Images of 23 Types of Cancer, Front Oncol, 2022 Feb 16;11:806603, PMID:
35251953, PMCID: PMC8889499, doi: 10.3389/fonc.2021.806603
Masudo et al, Changes in Triple-Negative Breast Cancer Molecular Subtypes in Patients
Without Pathologic Complete Response After Neoadjuvant Systemic Chemotherapy, JCO
Precision Oncology, 2022 Mar;6:e2000368, PMID: 35294223, PMCID: PMC8939918, doi: 10.1200/PO.20.00368
Lee et al, Unsupervised machine learning for identifying important visual features
through bag-of-words using histopathology data from chronic kidney disease, Sci Rep,
2022 Mar 22;12(1):4832, PMID: 35318420, PMCID: PMC8941143, doi: 10.1038/s41598-022-08974-8
Qin et al, Cellular engagement and interaction in the tumor microenvironment predict
non-response to PD-1/PD-L1 inhibitors in metastatic non-small cell lung cancer, Sci
Rep, 2022 May 31;12(1):9054, PMID: 35641540, PMCID: PMC9156701, doi: 10.1038/s41598-022-13236-8
Pati et al, Federated learning enables big data for rare cancer boundary detection,
Nature Communications, 2022 Dec 5;13(1):7346, PMID: 36470898, PMCID: PMC9722782, doi:
10.1038/s41467-022-33407-5
Haase et al, H3.3-G34 mutations impair DNA repair and promote cGAS/STING-mediated
immune responses in pediatric high-grade glioma models, Journal of Clinical Investigation,
2022 Nov 15;132(22):e154229, PMID: 36125896, PMCID: PMC9663161, DOI: 10.1172/JCI154229
Mello et al, Hypoxia promotes an inflammatory phenotype of fibroblasts in pancreatic
cancer, Oncogenesis, 2022 Sep 15;11(1):56, PMID: 36109493, PMCID: PMC9478137, DOI:
10.1038/s41389-022-00434-2
Griffith et al, MHC Class II Expression Influences the Composition and Distribution
of Immune Cells in the Metastatic Colorectal Cancer Microenvironment, Cancer (Basel),
2022 Aug 24;14(17):4092, PMID: 36077630, PMCID: PMC9454847, doi: 10.3390/cancers14174092
Munoz et al, Immune modulation by molecularly targeted photothermal ablation in a
mouse model of advanced hepatocellular carcinoma and cirrhosis, Scientific Reports,
2022 Aug 24;12(1):14449, PMID: 36002545, PMCID: PMC9402568, doi: 10.1038/s41598-022-15948-3
Warner et al, Investigating Useful Features for Overall Survival Prediction in Patients
with Low-Grade Glioma Using Histology Slides, Annual International Conference of the
IEEE Engineering in Medicine and Biology Society (EMBC), , PMID: 36085890, PMCID:
, DOI: 10.1109/EMBC48229.2022.9871027
Vo et al, The genetic heterogeneity and drug resistance mechanisms of relapsed refractory
multiple myeloma, Nature Communications, 2022 Jun 29;13(1):3750, PMID: 35768438, PMCID:
PMC9243087, doi: 10.1038/s41467-022-31430-0
Velez-Delgado et al, Extrinsic KRAS Signaling Shapes the Pancreatic Microenvironment
Through Fibroblast Reprogramming, Cell Mol Gastroenterol Hepatol, 2022;13(6):1673-1699,
PMID: 35245687, PMCID: PMC9046274, doi: 10.1016/j.jcmgh.2022.02.016
Panigrahi et al, Integrative Bayesian models using Post-selective inference: A case
study in radiogenomics, Biometrics, 44789, PMID: 35973786, PMCID: , DOI: 10.1111/biom.13740
Krishnan S, Barua S, Frankel T, Rao A, Towards the characterization of the tumor microenvironment
through dictionary learning-based interpretable classification of multiplexed immunofluorescence
images, Phys Med Biol, 2022 Dec 21;68(1), PMID: 36541756, PMCID: , doi: 10.1088/1361-6560/aca86a
Zhao Z, Fritsche L, Smith J, Bukherjee B, Lee S, The construction of cross-population
polygenic risk scores using transfer learning, Am J Hum Genetics, 2022 Nov 3;109(11):1998-2008,
PMID: 36240765, PMCID: PMC9674947, doi: 10.1016/j.ajhg.2022.09.010
Salvatore M, Purkayastha S, Ganapathi L, Bhattacharyya R, Kundu R, Zimmermann L, Ray
D, Hazra A, Kleinsasser M, Solomon S, Subbaraman R, Mukherjee B, Lessons from SARS-CoV-2
in India: A data-driven framework for pandemic resilience, Sci Adv, 2022 Jun 17;8(24):eabp8621,
PMID: 35714183, PMCID: PMC9205583, doi: 10.1126/sciadv.abp8621
Khoja et al, Endometriosis and menopausal hormone therapy impact the hysterectomy-ovarian
cancer association, Gynocol Oncol, 2022 Jan;164(1):195-201, PMID: 34776242, PMCID:
PMC9444325, doi: 10.1016/j.ygyno.2021.10.088
Chen et al, Global Prevalence of Post COVID-19 Condition or Long COVID: A Meta-Analysis
and Systematic Review, J Infect Dis, 2022 Apr 16;jiac136, PMID: 35429399, PMCID: PMC9047189,
doi: 10.1093/infdis/jiac136
Du et al, Optimal diagnostic test allocation strategy during the COVID-19 pandemic
and beyond, Stat Med , 2022 Jan 30;41(2):310-327, PMID: 34697824, PMCID: PMC8661762,
doi: 10.1002/sim.9238
Brieger et al, High Prediagnosis Inflammation-Related Risk Score Associated with Decreased
Ovarian Cancer Survival, Cancer Epidemiol Biomarkers Prev, 2022 Feb;31(2):443-452,
PMID: 34789471, PMCID: PMC9281656, doi: 10.1158/1055-9965.EPI-21-0977
Beesley L, Mukherjee B, Statistical inference for association studies using electronic
health records: handling both selection bias and outcome misclassification, Biometrics,
2022 Mar;78(1):214-226, PMID: 33179768, doi: 10.1111/biom.13400
Tsao et al, Depression, Anxiety, and Patterns of Mental Health Care Among Men With
Prostate Cancer Receiving Androgen Deprivation Therapy, Oncologist, 2022 Apr 5;27(4):314-322,
PMID: 35298660, PMCID: PMC8982372, doi: 10.1093/oncolo/oyab033
Apfelbaum A, Wu F, Wawkins A, Magnuson B, Jimenez J, Taylor S, Wrenn E, Waltner O,
Pfaltzgraff E, Song J, Hall C, Wellik D, Ljungman M, Furlan S, Ryan R, Sarthy J, Lawlor
E, EWS-FLI1 and HOXD13 control tumor cell plasticity in Ewing sarcoma, Clin Cancer
Res, 2022 Jun 2;clincanres.0384.2022-2-5 13:20:00.280, PMID: 35653119, PMCID: PMC9588607,
doi: 10.1158/1078-0432.CCR-22-0384
Wang et al, SurvMaximin: Robust federated approach to transporting survival risk prediction
models, Journal of Biomedical Informatics, 2022 Oct;134:104176, PMID: 36007785, PMCID:
PMC9707637, doi: 10.1016/j.jbi.2022.104176
, Surgical Management of Rhabdomyosarcoma of the Nasal Cavity and Paranasal Sinuses:
Analysis of Operative Indications, Settings, and Outcomes, J Neurol Surg B Skull Base,
, PMID: , PMCID: ,
Smith J, Bellile E, Ellsperman S, Heft-Neal M, Mann J, Birkeland A, Hoesli R, Swiecicki
P, Worden F, Schonewolf C, Shah J, Mierzwa M, Rosko A, Stucken C, Chinn S, Shuman
A, Casper K, Malloy K, Prince M, Wolf G, Thomas D, McHuhh J, Brenner J, SPector M,
Prognostic value of CD103+ tumor-infiltrating lymphocytes and programmed death ligand-1
(PD-L1) combined positive score in recurrent laryngeal squamous cell carcinoma, Oral
Oncol, 2022 Dec;135:106226, PMID: 36323071, PMCID: , doi: 10.1016/j.oraloncology.2022.106226
Banerjee et al, Phosphorylation of TRIP13 at Y56 induces radiation resistance but
sensitizes head and neck cancer to cetuximab, Mol Ther, 2022 Jan 5;30(1):468-484,
PMID: 34111559, PMCID: PMC8753291 , doi: 10.1016/j.ymthe.2021.06.009
Costa de Medeiros M, Liu M, Banerjee R, Bellile E, D'Silva N, Rossa C, Galanin mediates
tumor-induced immunosuppression in head and neck squamous cell carcinoma, Cell Oncol
(dordr), 2022 Apr;45(2):241-256, PMID: 35267186, PMCID: PMC9050779, doi: 10.1007/s13402-021-00631-y
Michmerhuizen et al, Combined Pik3ca-H1047R and loss-of-function Notch1 alleles decrease
survival time in a 4-nitroquinoline N-oxide-driven head and neck squamous cell carcinoma
model, Oral Oncol, 2022 Mar;126:105770, PMID: 35172244, doi: 10.1016/j.oraloncology.2022.105770
Swiecicki et al, Randomized trial of laryngeal organ preservation evaluating two cycles
of induction chemotherapy with platinum, docetaxel, and a novel Bcl-xL inhibitor,
Head Neck, 2022 Jul;44(7):1509-1519, PMID: 35416374, doi: 10.1002/hed.27043
Rappold P, Vuong L, Leibold J, Chakiryan N, Curry M, Kuo F, Sabio E, Jiang H, Nixon
B, Liu M, Berglund A, Silagy A, Mascareno E, Golkaram M, Marker M, Reising A, Savchenko
A, Millholland J, Chen Y, Russo P, Coleman J, Reznik E, Manley B, Ostrovnaya I, Makarov
V, DiNatale R, Blum K, Ma X, Chowell D, Li M, Solit D, Lowe S, Chan T, Motzer R, Voss
M, Hakimi A, A Targetable Myeloid Inflammatory State Governs Disease Recurrence in
Clear Cell Renal Cell Carcinoma, Cancer Discov, 2022 Jun 27;candisc.0925.2021, PMID:
35758895, doi: 10.1158/2159-8290
Wang M, Jiang H, Liu X, Wang X, Biophysics involved in the process of tumor immune
escape, iScience, 2022 Mar 19;25(4):104124, PMID: 35402878, PMCID: PMC8983385, doi:
10.1016/j.isci.2022.104124
Jiang H, Huang L, Xia Y, Nonparametric regression with right-censored covariate via
conditional density function, Stat Med , 2022 May 20;41(11):2025-2051, PMID: 35124839,
doi: 10.1002/sim.9343
Wu W, Taylor JMG, Brouwer A, Luo L, Kang J, Jiang H, He K, Scalable proximal methods
for cause-specific hazard modeling with time-varying coefficients, Lifetime Data Anal,
2022 Apr;28(2):194-218, PMID: 35092553, PMCID: PMC9201734, doi: 10.1007/s10985-021-09544-2
Schmitd L, Perez-Pacheco C, Bellile E, Wu W, Casper K, Mierza M, Rozek L, Wolf G,
Taylor JMG, D'Silva N, Spatial and Transcriptomic Analysis of Perineural Invasion
in Oral Cancer, Clin Cancer Res, 2022 May 26;clincanres.4543.2021, PMID: 35617517,
PMCID: PMC9560986, doi: 10.1158/1078-0432.CCR-21-4543
Chang et al, Impact of Nodal Metastases in HPV-negative Oropharyngeal Cancer, Cancer
Epidemiol Biomarkers Prev, 2022 May 17;cebp.0776.2021, PMID: 35579907, doi: 10.1158/1055-9965.EPI-21-0776
Getz et al, The association between inflammatory biomarkers and statin use among patients
with head and neck squamous cell carcinoma, Head Neck, 2022 Jun;44(6):1393-1403, PMID:
35338544, PMCID: PMC9088158 , doi: 10.1002/hed.27040
Li P, Taylor JMG, Boonstra P, Lawrence T, Schipper M, Utility based approach in individualized
optimal dose selection using machine learning methods, Stat Med , 2022 Jul 20;41(16):2957-2977,
PMID: 35343595, PMCID: PMC9233043, doi: 10.1002/sim.9396.
Chua et al, Myotubularin-related phosphatase 5 is a critical determinant of autophagy
in neurons, Curr Biol, 2022 Jun 20;32(12):2581-2595.e6, PMID: 35580604, PMCID: PMC9233098,
doi: 10.1016/j.cub.2022.04.053
Yi et al, KDM6A Regulates Cell Plasticity and Pancreatic Cancer Progression by Noncanonical
Activin Pathway, Cell Mol Gastroenterol Hepatol, 2022;13(2):643-667, PMID: 34583087,
PMCID: PMC8715196, doi: 10.1016/j.jcmgh.2021.09.014
Kidwell et al, Application of Bayesian methods to accelerate rare disease drug development:
scopes and hurdles, Orphanet J Rare Dis, 2022 May 7;17(1):186, PMID: 35526036, PMCID:
PMC9077995, doi: 10.1186/s13023-022-02342-5
Hwang M, Medley S, Shakeel F, Vanderwerff B, Zawistowski M, Kidwell K, Hertz D, Lack
of association of CYP2B6 pharmacogenetics with cyclophosphamide toxicity in patients
with cancer, Support Care Cancer, 2022 Sep;30(9):7355-7363, PMID: 35606478, doi: 10.1007/s00520-022-07118-y
Novice et al, Identifying Barriers and Facilitators to Scalp Cooling Therapy Through
a National Survey of the Awareness, Practice Patterns, and Attitudes of Oncologists,
JCO Oncol Pract, 2022 Feb;18(2):e225-e234, PMID: 34529505, doi: 10.1200/OP.21.00273
Kurlander et al, Development of a multicomponent implementation strategy to reduce
upper gastrointestinal bleeding risk in patients using warfarin and antiplatelet therapy,
and protocol for a pragmatic multilevel randomized factorial pilot implementation
trial, Implement Sci Commun, 2022 Jan 28;3(1):8, PMID: 35090577, PMCID: PMC8796614,
doi: 10.1186/s43058-022-00256-8
Acs et al, Systematically higher Ki67 scores on core biopsy samples compared to corresponding
resection specimen in breast cancer: a multi-operator and multi-institutional study,
Mod Pathol, 2022 Oct;35(10):1362-1369, PMID: 35729220, PMCID: PMC9514990, doi: 10.1038/s41379-022-01104-9
Pasternak et al, Impact of Pharmacogenetics on Intravenous Tacrolimus Exposure and
Conversions to Oral Therapy, Transplant Cell Therapy, 2022 Jan;28(1):19.e1-19.e7,
PMID: 34583027, doi: 10.1016/j.jtct.2021.09.011
Joyce et al, Association between nociplastic pain and premature endocrine therapy
discontinuation in breast cancer patients, Breast Cancer Research and Treatment, 44878,
PMID: 36371776, PMCID: , doi: 10.1007/s10549-022-06806-x
Hertz et al, Genome-wide association study of aromatase inhibitor discontinuation
due to musculoskeletal symptoms, Support Care Cancer, 2022 Oct;30(10):8059-8067, PMID:
35776183, PMCID: PMC9529953, doi: 10.1007/s00520-022-07243-8
Gonzalez et al, EZH2 T367 phosphorylation activates p38 signaling through lysine methylation
to promote breast cancer progression, iScience, 2022 Aug 2;25(8):104827., PMID: 35992062,
PMCID: PMC9389258, doi: 10.1016/j.isci.2022.104827.
Chao Y, Tran Q, Tsodikov A, Kidwell K, Joint modeling and multiple comparisons with
the best of data from a SMART with survival outcomes, Biostatistics, 2022 Jan 13;23(1):294-313,
PMID: 32659784, doi: 10.1093/biostatistics/kxaa025
Chao et al, Power prior models for estimating response rates in a small n, sequential,
multiple assignment, randomized trial, Statistical Methods in Medical Research, 2022
Dec;31(12):2297-2309, PMID: 36082955, PMCID: , doi: 10.1177/09622802221122795
Drake C, Kalmbach D, Cheng P, Ahmedani B, Peterson E, Joseph C, Roth T, Kidwell K,
Sagong C, Sleep to Reduce Incident Depression Effectively (STRIDE): study protocol
for a randomized controlled trial comparing stepped-care cognitive-behavioral therapy
for insomnia versus sleep education control to prevent major depression, Trials, 2022
Dec 1;23(1):967, PMID: 36457045, PMCID: PMC9713737,
Subbiah I, Markham M, Graff S, Matt-Amaral L, Close J, Griffith K, Jagsi R, Incidence,
Nature, and Consequences of Oncologists' Experiences With Sexual Harassment, J Clin
Oncol, 2022 Apr 10;40(11):1186-1195, PMID: 35089804, PMCID: PMC8987225, doi: 10.1200/JCO.21.02574.
Jagsi R, Griffith K, Vicini F, Boike T, Dominello M, Gustafson G, Hayman J, Moran
J, Radawski J, Walker E, Pierce L, Identifying Patients Whose Symptoms Are Underrecognized
During Treatment With Breast Radiotherapy, JAMA Oncology, 2022 Jun 1;8(6):887-894,
PMID: 35446337, PMCID: PMC9026246 , doi: 10.1001/jamaoncol.2022.0114
Jagsi R, Griffith K, Moran J, Vicini F, Pierce L, In Reply to Ling and Beriwal, Int
J Radiat Oncol Biol Phys, 2022 Mar 15;112(4):1064, PMID: 35190050, doi: 10.1016/j.ijrobp.2021.11.018
Singer K, Burns C, Griffith K, Opipari V, Martin D, Shellhaas R, Jagsi R, Gender Differences
in Endowed Chairs in Pediatrics, J Pediatr, 2022 May 27;S0022-3476(22)00492-9, PMID:
35636563, doi: 10.1016/j.jpeds.2022.05.040
Jones et al, Patient Experiences, Trust, and Preferences for Health Data Sharing,
JCO Oncol Pract, 2022 Mar;18(3):e339-e350, PMID: 34855514, PMCID: PMC8932496 , doi:
10.1200/OP.21.00491
Mody et al, Gender Differences in Work-Family Conflict Experiences of Faculty in Academic
Medicine, J Gen Intern Med, 2022 Jan;37(1):280-282, PMID: 33469767, PMCID: PMC8739409 ,
doi: 10.1007/s11606-020-06559-7
Jia et al, Factors Associated With Endowed Chair Allocation in Medical Oncology in
the United States, JNCI Cancer Spectr, 2022 May 2;6(3):pkac036, PMID: 35657340, PMCID:
PMC9165554, doi: 10.1093/jncics/pkac036
Gharzai L, Griffith K, Beeler W, Burrows H, Hammoud M, Rodgers P, Sabel M, Caethers
J, Jagsi R, Speaker Introductions at Grand Rounds: Differences in Formality of Address
by Gender and Specialty, J Women's Health (Larchmont), 2022 Feb;31(2):202-209, PMID:
34197213, doi: 10.1089/jwh.2021.0031
McClelland S, Huang C, Griffith K, Shan M, Holliday E, Jagsi R, Zellars R, Composition
of the Current Academic Radiation Oncology Workforce in Comprehensive Cancer Centers,
JCO Oncol Pract, 2022 May;18(5):e740-e747, PMID: 34919411, doi: 10.1200/OP.21.00609
Jagsi et al, Disease Control After Hypofractionation Versus Conventional Fractionation
for Triple Negative Breast Cancer: Comparative Effectiveness in a Large Observational
Cohort, Int J Radiat Oncol Biol Phys, 2022 Mar 15;112(4):853-860, PMID: 34718094,
PMCID: PMC9020566 , doi: 10.1016/j.ijrobp.2021.10.012
Jagsi et al, Comparative Effectiveness Analysis of 3D-Conformal Radiation Therapy
Versus Intensity Modulated Radiation Therapy (IMRT) in a Prospective Multicenter Cohort
of Patients With Breast Cancer, Int J Radiat Oncol Biol Phys, 2022 Mar 1;112(3):643-653,
PMID: 34634437, doi: 10.1016/j.ijrobp.2021.09.053
Dilworth et al, The Impact of Chemotherapy on Toxic Effects and Cosmetic Outcome in
Patients Receiving Whole Breast Irradiation: An Analysis Within a Statewide Quality
Consortium, Int J Radiat Oncol Biol Phys, 2022 Jun 1;113(2):266-277, PMID: 35157997,
doi: 10.1016/j.ijrobp.2022.02.004
Jagsi R, Griffith K, Underrecognition of Symptoms During Breast Radiotherapy-Reply,
JAMA Oncology, 2022 Oct 1;8(10):1510-1511, PMID: 35951335, PMCID: , doi: 10.1001/jamaoncol.2022.3245
Coffman L, Orellana T, Liu T, Frisbie L, Normolle D, Griffith K, uppal S, McLean K,
Berger J, Boisen M, Courtney-Brooks M, Edwards R, Lesnock J, Mahdi H, Olawaiye A,
Sukumvanich P, Taylor S, Buckanovich R, Phase I trial of ribociclib with platinum
chemotherapy in ovarian cancer, JCI Insight, 2022 Sep 22;7(18):e160573, PMID: 35972817,
PMCID: PMC9675476, doi: 10.1172/jci.insight.160573
Champan C, Jagsi R, Griffith K, Moran J, Vicini F, Walker E, Dominello M, Abu-Isa
E, Hayman J, Laucis A, Mietzel M, Pierce L, Mediators of Racial Disparities in Heart
Dose Among Whole Breast Radiotherapy Patients, J Natl Cancer Inst, 2022 Dec 8;114(12):1646-1655,
PMID: 35916737, PMCID: , doi: 10.1093/jnci/djac120
Sahai V, Griffith K, Beg M, Shaib W, Mahalingam D, Zhen D, Deming D, Zalupski M, A
randomized phase 2 trial of nivolumab, gemcitabine, and cisplatin or nivolumab and
ipilimumab in previously untreated advanced biliary cancer: BilT-01, Cancer, 2022
Oct 1;128(19):3523-3530, PMID: 35895381, PMCID: PMC9540241, doi: 10.1002/cncr.34394
King R, Schaefer J, Sahai V, Griffith K, Sood S, Retrospective Cohort Analysis of
Aspirin Use and Venous Thromboembolism in Patients with Pancreatic Cancer and an Indwelling
Central Venous Catheter, TH Open, 2022 Aug 4;6(3):e221-e229, PMID: 36046199, PMCID:
PMC9352440, doi: 10.1055/s-0042-1747685
Shen C, Risk M, Schiopu E, Hayek S, Xie T, Holevinski L, Akin C, Freed G, Zhao L,
Efficacy of COVID-19 vaccines in patients taking immunosuppressants, Ann Rheum Dis,
2022 Jun;81(6):875-880, PMID: 35197265, PMCID: PMC9422955, doi: 10.1136/annrheumdis-2021-222045
Zhou K, Xia Y, Yang M, Xiao W, Zhao L, Hu R, Shoaib K, Yan R, Dai K, Actin polymerization
regulates glycoprotein Ibα shedding, Platelets, 2022 Apr 3;33(3):381-389, PMID: 33979555,
doi: 10.1080/09537104.2021.1922882
Liu et al, Carbodiphosphorane-Stabilized Parent Dioxophosphorane: A Valuable Synthetic
HO 2 P Source, J Am Chem Soc, 2022 Apr 27;144(16):7357-7365, PMID: 35436104, doi:
10.1021/jacs.2c00936
Dong T, Fan W, Tao Y, Wu R, Wang L, Zhao L, Liu L, Fan Z, Duodenal obstruction associated
with a ruptured pancreaticoduodenal artery aneurysm, Rev Esp Enferm Dig, 2022 Jul;114(7):438-439,
PMID: 35199535, doi: 10.17235/reed.2022.8727/2022
He et al, Prognostic Value of Histidine-Rich Glycoprotein for Community-Acquired Pneumonia,
Dis Markers, 2022 Feb 1;2022:4713045, PMID: 35154511, PMCID: PMC8824745, doi: 10.1155/2022/4713045
Zhang et al, TRX2/Rab35 Interaction Impairs Exosome Secretion by Inducing Rab35 Degradation,
Int J Mol Sci, 2022 Jun 12;23(12):6557, PMID: 35743001, PMCID: PMC9224307, doi: 10.3390/ijms23126557
Risk et al, Comparative Effectiveness of COVID-19 Vaccines against the Delta Variant,
Clin Infect Dis, 2022 Feb 7;ciac106, PMID: 35137006, PMCID: PMC9047165, doi: 10.1093/cid/ciac106
Chen et al, Detection of Barrett's neoplasia with a near-infrared fluorescent heterodimeric
peptide, Endoscopy, 2022 Mar 17., PMID: 35299273, doi: 10.1055/a-1801-2406
Liu Y, Zhou S, Zhao L Gu X, Identification of Neuronal Cells in Sciatic Nerves of
Adult Rats, Front Cell Neuroscience, 2022 Mar 25;16:816814, PMID: 35401123, PMCID:
PMC8991689, doi: 10.3389/fncel.2022.816814.
Xing et al, Characteristics of peripheral blood Gamma-glutamyl transferase in different
liver diseases, Medicine (Baltimore), 2022 Jan 7;101(1):e28443, PMID: 35029891, PMCID:
PMC8735790, doi: 10.1097/MD.0000000000028443
Song et al, Identification and validation of prognosis-associated DNA repair gene
signatures in colorectal cancer, Sci Rep, 2022 Apr 28;12(1):6946, PMID: 35484177,
PMCID: PMC9050689, doi: 10.1038/s41598-022-10561-w
Wei et al, Nuplazid suppresses esophageal squamous cell carcinoma growth in vitro
and in vivo by targeting PAK4, Br J Cancer, 2022 Apr;126(7):1037-1046, PMID: 34912075,
PMCID: PMC8980085, doi: 10.1038/s41416-021-01651-z
Bryant et al, De-escalating adjuvant durvalumab treatment duration in stage III non-small
cell lung cancer, Eur J Cancer, 2022 Jun 12;171:55-63, PMID: 35704975, doi: 10.1016/j.ejca.2022.04.033
Han et al, BCAP31 is involved in modulating colorectal cancer cell proliferation via
the Emerin/β-catenin axis, Exp Cell Res, 2022 Jun 15;418(1):113265, PMID: 35716785,
doi: 10.1016/j.yexcr.2022.113265
Bao et al, Oxethazaine inhibits esophageal squamous cell carcinoma proliferation and
metastasis by targeting aurora kinase A, Cell Death Dis, 2022 Feb 25;13(2):189, PMID:
35217647, PMCID: PMC8881465, doi: 10.1038/s41419-022-04642-x
Taylor A, Setia N, Alpert L, Zhao L, Lamps L, Hart J, Waxman I, Hissong E, Choi E,
Shi J, Owens S, Westerhoff M, Measuring the Submucosal Depth of Invasion in Endoscopic
Mucosal Resections for Barrett-associated Adenocarcinoma, Arch Pathol Lab Med, 2022
Nov 1;146(11):1338-1344, PMID: 35213893, PMCID: PMC9402809, doi: 10.5858/arpa.2021-0072-OA
Worlikar et al, Impact of Histotripsy on Development of Intrahepatic Metastases in
a Rodent Liver Tumor Model, Cancers (Basel), 2022 Mar 22;14(7):1612, PMID: 35406383,
PMCID: PMC8996987, doi: 10.3390/cancers14071612
Bryant et al, Prognostic and predictive value of neutrophil-to-lymphocyte ratio with
adjuvant immunotherapy in stage III non-small-cell lung cancer, Lung Cancer, 2022
Jan;163:35-41, PMID: 34896803, PMCID: PMC8770596 , doi: 10.1016/j.lungcan.2021.11.021
Zhang et al, Long Non-Coding LEF1-AS1 Sponge miR-5100 Regulates Apoptosis and Autophagy
in Gastric Cancer Cells via the miR-5100/DEK/AMPK-mTOR Axis, Int J Mol Sci, 2022 Apr
26;23(9):4787, PMID: 35563178, PMCID: PMC9101949, doi: 10.3390/ijms23094787
Bryant et al, Timing of Adjuvant Durvalumab Initiation Is Not Associated With Outcomes
in Stage III Non-small Cell Lung Cancer, Int J Radiat Oncol Biol Phys, 2022 May 1;113(1):60-65.,
PMID: 35115216, PMCID: PMC9018488 , doi: 10.1016/j.ijrobp.2021.12.176
Deng et al, Pre-Administration of Berberine Exerts Chemopreventive Effects in AOM/DSS-Induced
Colitis-Associated Carcinogenesis Mice via Modulating Inflammation and Intestinal
Microbiota, Nutrients, 2022 Feb 9;14(4):726, PMID: 35215376, PMCID: PMC8879943, doi:
10.3390/nu14040726
Taylor et al, Cribriform colon cancer: a morphological growth pattern associated with
extramural venous invasion, nodal metastases and microsatellite stability, J Clin
Pathol, 2022 Jul;75(7):483-487, PMID: 33782192, doi: 10.1136/jclinpath-2021-207485
Yousif et al, Quantitative Image Analysis as an Adjunct to Manual Scoring of ER, PgR,
and HER2 in Invasive Breast Carcinoma, Am J Clin Pathol, 2022 Jun 7;157(6):899-907,
PMID: 34875014, doi: 10.1093/ajcp/aqab206
Jiang C, Zhao L, Schuetze S, Chugh R, Giant Cell Tumor of Bone: Effect of Longer Dosing
Intervals of Denosumab on Tumor Control and Bone-related Complications, Oncologist,
2022 Jul 5;27(7):595-599, PMID: 35589095, PMCID: PMC9256029, doi: 10.1093/oncolo/oyac066
Sankar et al, Real World Outcomes versus Clinical Trial Results of Durvalumab Maintenance
in Veterans with Stage III Non-Small Cell Lung Cancer, Cancers (Basel), 2022 Jan
26;14(3):614., PMID: 35158881, PMCID: PMC8833364, doi: 10.3390/cancers14030614
Deng et al, SND1 acts as a functional target of miR-330-5p involved in modulating
the proliferation, apoptosis and invasion of colorectal cancer cells, Biochem Biophys
Res Commun, 2022 Jul 30;615:116-122, PMID: 35609416, doi: 10.1016/j.bbrc.2022.05.045
Song et al, Identification of an Endoplasmic Reticulum Stress-Related Gene Signature
to Evaluate the Immune Status and Pre, Front Genet, 2022 May 27;13:850200, PMID: 35711939,
PMCID: PMC9197218, doi: 10.3389/fgene.2022.850200
Bryant A, Sankar K, Strohbehn G, Zhao L, Daniel V, Elliott D, Ramnath N, Green M,
Prognostic and Predictive Role of PD-L1 Expression in Stage III Non-small Cell Lung
Cancer Treated With Definitive Chemoradiation and Adjuvant Durvalumab, Int J Radiat
Oncol Biol Phys, 2022 Apr 18;S0360-3016(22)00248-6, PMID: 35450753, PMCID: PMC9246927,
doi: 10.1016/j.ijrobp.2022.03.015
Wages N, Braun T, Normolle D, Schipper M, Adaptive Phase 1 Design in Radiation Therapy
Trials, Int J Radiat Oncol Biol Phys, 2022 Jul 1;113(3):493-499, PMID: 35777394, PMCID:
PMC9260906, doi: 10.1016/j.ijrobp.2022.02.031
Jackson W, Tang M, Schipper M, Sandler H, Zumsteg Z, Efstathiou J, Shipley W, Seiferheld
W, Lukka H, Bahary JP, Zietman A, Pisansky T, Zeitzer K, Hall W, Dess R, Lovett R,
Balogh A, Feng F, Spratt D, Biochemical Failure Is Not a Surrogate End Point for Overall
Survival in Recurrent Prostate Cancer: Analysis of NRG Oncology/RTOG 9601, J Clin
Oncol, 2022 Jun 23;JCO2102741, PMID: 35737923, PMCID: PMC9514834, doi: 10.1200/JCO.21.02741
Homer V, Yap C, Bond S, Holmes J, Stocken D, Walker K, Robinson E, Wheeler G, Brown
S, Hinsley S, Schipper M, Weir C, Rantell K, Prior T, Yu L, Kirkpatrick J, Bedding
A, Gamble C, Gaunt P, Early phase clinical trials extension to guidelines for the
content of statistical analysis plans, BMJ, 2022 Feb 7;376:e068177, PMID: 35131744,
PMCID: PMC8819597, doi: 10.1136/bmj-2021-068177
Cousins et al, Pretreatment Levels of Soluble Tumor Necrosis Factor Receptor 1 and
Hepatocyte Growth Factor Predict Toxicity and Overall Survival After 90 Y Radioembolization:
Potential Novel Application of Biomarkers for Personalized Management of Hepatotoxicity,
J Nucl Medicine, 2022 Jun;63(6):882-889, PMID: 34503962, PMCID: PMC9157720, doi: 10.2967/jnumed.121.262447
Chase E, Bryant A, Sun Y, Jackson W, Spratt D, Dess R, Schipper M, Development and
validation of a life expectancy calculator for US patients with prostate cancer, BJU
Int, 2022 Oct;130(4):496-506, PMID: 35373440, PMCID: PMC9474626, doi: 10.1111/bju.15740
Bryant et al, Uptake of Adjuvant Durvalumab After Definitive Concurrent Chemoradiotherapy
for Stage III Nonsmall-cell Lung Cancer, Am J Clin Onc, 2022 Apr 1;45(4):142-145,
PMID: 35271524, doi: 10.1097/COC.0000000000000899
Laucis et al, Racial Differences in Treatments and Toxicity in Patients With Non-Small-Cell
Lung Cancer Treated With Thoracic Radiation Therapy, JCO Oncol Pract, 2022 Jun;18(6):e1034-e1044,
PMID: 35167337, doi: 10.1200/OP.21.00224
Speers et al, Cardiac Magnetic Resonance Imaging and Blood Biomarkers for Evaluation
of Radiation-Induced Cardiotoxicity in Patients With Breast Cancer: Results of a Phase
2 Clinical Trial, Int J Radiat Oncol Biol Phys, 2022 Feb 1;112(2):417-425, PMID: 34509552,
doi: 10.1016/j.ijrobp.2021.08.039
Wilkie et al, Association Between Physician- and Patient-Reported Symptoms in Patients
Treated With Definitive Radiation Therapy for Locally Advanced Lung Cancer in a Statewide
Consortium, Int J Radiat Oncol Biol Phys, 2022 Mar 15;112(4):942-950, PMID: 34838865,
doi: 10.1016/j.ijrobp.2021.11.024
Owen et al, Investigating the Incidence of Pulmonary Abnormalities as Identified by
Parametric Response Mapping in Patients With Lung Cancer Before Radiation Treatment,
Adv Radiation Oncology, 2022 Apr 25;7(4):100980, PMID: 35693252, PMCID: PMC9184868,
doi: 10.1016/j.adro.2022.100980
Herr et al, Effect of Education and Standardization of Cardiac Dose Constraints on
Heart Dose in Patients With Lung Cancer Receiving Definitive Radiation Therapy Across
a Statewide Consortium, Pract Radia Oncol, 2022 Feb 1;S1879-8500(22)00007-8, PMID:
35121192, doi: 10.1016/j.prro.2022.01.002.
Polan D, Epelman M, Wu V, Sun Y, Varsta M, Owen D, Jarema D, Matrosic C, Jolly S,
Schonewolf C, Schipper M, Matuszak M, Direct incorporation of patient-specific efficacy
and toxicity estimates in radiation therapy plan optimization, Med Phys, 2022 Oct;49(10):6279-6292,
PMID: 35994026PMC9826508, doi: 10.1002/mp.15940. Epub 2022 Sep 2
Covert E, Kitzpatrick K, Mikell J, Kaza R, Millet J, Barkmeier D, Gemmete J, Christensen
J, Schipper M, Dewaraja Y, Intra- and inter-operator variability in MRI-based manual
segmentation of HCC lesions and its impact on dosimetry, EJNMMI Phys, 2022 Dec 21;9(1):90,
PMID: 36542239PMC9772368, doi: 10.1186/s40658-022-00515-6
Cher B, Dykstra M, Wang C, Schipper M, Hayman J, Mayo C, Jagsi R, Trends in Radiation
Oncology Treatment Fractionation at a Single Academic Center, 2010 to 2020, Adv Radiation
Oncology, 2022 Jul 22;7(6):101032, PMID: 36072755PMC9441303, doi: 10.1016/j.adro.2022.101032
Cousins M, VanTil M, Steppe E, Ng S, Ellimoottil C, Sun Y, Schipper M, Evans J, Age,
race, insurance type, and digital divide index are associated with video visit completion
for patients seen for oncologic care in a large hospital system during the COVID-19
pandemic, PLoS One, 2022 Nov 17;17(11):e0277617, PMID: 36395112PMC9671352, doi: 10.1371/journal.pone.0277617
Mierzwa M, Aryal M, Lee C, Schipper M, VanTil M, Morales K, Swiecicki P, Casper K,
Malloy K, Spector M, SHuman A, Chinn S, Prince M, Stucken C, Rosko A, Lawrence T,
Brenner J, Rosen B, Schonewolf C, Shah J, Eisbruch A, Worden F, Cao Y, Randomized
Phase II Study of Physiologic MRI-Directed Adaptive Radiation Boost in Poor Prognosis
Head and Neck Cancer, Clin Cancer REs, 2022 Dec 1;28(23):5049-5057, PMID: 36107219PMC9773159,
doi: 10.1158/1078-0432.CCR-22-1522
Jagsi R, Griffith K, Vicini F, Boike T, Dominello M, Gustafson G, Hayman J, Moran
J, Radawski J, Walker E, Pierce L, Identifying Patients Whose Symptoms Are Underrecognized
During Treatment With Breast Radiotherapy, JAMA Oncology, 2022 Jun 1;8(6):887-894,
PMID: 35446337PMC9026246, 2022 Jun 1;8(6):887-894
Vince R, Jiang R, Qi J, Tosoian J, Takele R, Feng F, Linsell S, Johnson A, Shetty
S, Hurley P, Miller D, George A, Ghani K, Sun F, Seymore M, Dess R, Jackson W, Schipper
M, Spratt D, Morgan T, Impact of Decipher Biopsy testing on clinical outcomes in localized
prostate cancer in a prospective statewide collaborative, Prostate Cancer Prostatic
Dis, 2022 Apr;25(4):677-683, PMID: 34285350PMC8770695, doi: 10.1038/s41391-021-00428-y
Jagsi R, Schipper M, Mietzel M, Pandya R, Moran J, Matuszak M, Vicini F, Jolly J,
Paximadis P, Mancini B, Griffith K, Hayman J, Pierce L, The Michigan Radiation Oncology
Quality Consortium: A Novel Initiative to Improve the Quality of Radiation Oncology
Care, Int J Radiat Oncol Biol Phys, 2022 Jun 1;113(2):257-265, PMID: 35124133, doi:
10.1016/j.ijrobp.2022.01.048
Hinton et al, Improved prediction of radiation pneumonitis by combining biological
and radiobiological parameters using a data-driven Bayesian network analysis, Trans
Oncol, 2022 Jul;21:101428, PMID: 35460942, PMCID: PMC9046881, doi: 10.1016/j.tranon.2022.101428
Qin et al, ATRX loss in glioma results in dysregulation of cell-cycle phase transition
and ATM inhibitor radio-sensitization, Cell Rep, 2022 Jan 11;38(2):110216, PMID: 35021084,
PMCID: PMC8759735, doi: 10.1016/j.celrep.2021.110216
Qin et al, Comprehensive enhancer-target gene assignments improve gene set level interpretation
of genome-wide regulatory data, Genome Biol, 2022 Apr 26;23(1):105, PMID: 35473573,
PMCID: PMC9044877, doi: 10.1186/s13059-022-02668-0
Van Poznak et al, Osteonecrosis of the jaw risk factors in bisphosphonate-treated
patients with metastatic cancer, Oral Dis, 2022 Jan;28(1):193-201, PMID: 33274559,
PMCID: PMC8284838 , doi: 10.1111/odi.13746
Chen D, Rob F, Mukherjee R, Girodano T, Haymart M, Banerjee M, Variation in the Diagnosis
of Noninvasive Follicular Thyroid Neoplasm with Papillary-like Nuclear Features, J
Clin Endocrinol Metab, 2022 Sep 28;107(10):e4072-e4077, PMID: 35918064, PMCID: PMC9516041,
doi: 10.1210/clinem/dgac466
Koshkin et al, Efficacy of enfortumab vedotin in advanced urothelial cancer: Analysis
from the Urothelial Cancer Network to Investigate Therapeutic Experiences (UNITE)
study, Cancer, 2022 Mar 15;128(6):1194-1205, PMID: 34882781, doi: 10.1002/cncr.34057
Lussiez et al, A multi-modal study examining long-term bowel, urinary, and sexual
function after rectal cancer surgery, Am J Surg, 2022 Jul;224(1 Pt B):562-568, PMID:
35260231, doi: 10.1016/j.amjsurg.2022.02.046
Radhakrishnan et al, Physician Specialties Involved in Thyroid Cancer Diagnosis and
Treatment: Implications for Improving Health Care Disparities, J Clin Endocrinol Metab,
2022 Feb 17;107(3):e1096-e1105, PMID: 34718629, PMCID: PMC8852205 , doi: 10.1210/clinem/dgab781
Radhakrishnan et al, Exploring Variation in the Receipt of Recommended Active Surveillance
for Men with Favorable-Risk Prostate Cancer, J Urol, 2022 May 6;101097JU0000000000002734,
PMID: 35522191, PMCID: PMC9378546, doi: 10.1097/JU.0000000000002734
Berlin et al, Perceived financial decline related to breast reconstruction following
mastectomy in a diverse population-based cohort, Cancer , 2022 Mar 15;128(6):1284-1293,
PMID: 34847259, PMCID: PMC8882150 , doi: 10.1002/cncr.34048.
Kurian et al, Chemotherapy Regimens Received by Women with BRCA1/2 Pathogenic Variants
for Early-Stage Breast Cancer Treatment, JNCI Cancer Spectr, 2022 Jun 20;pkac045,
PMID: 35723570, PMCID: PMC9305849, doi: 10.1093/jncics/pkac045
Suwanabol P, Li Y, Abrahamse P, Roo A, Vu J, Milveira M, Mody L, Dimick J, Functional
and Cognitive Decline Among Older Adults After High-risk Surgery, Ann Surg, 2022 Jan
1;275(1):e132-e139, PMID: 32404660, PMCID: PMC8060894 , doi: 10.1097/SLA.0000000000003950
Veensta C, Ellis K, Abrahamse P, Ward K, Morris A, Hawley S, A dyadic survey study
of partner engagement in and patient receipt of guideline-recommended colorectal cancer
surveillance, BMC Cancer, 2022 Oct 13;22(1):1060., PMID: 36339796, PMCID: PMC9559022,
doi: 10.1186/s12885-022-10131-3
Kurian A, Abrahamse P, Bondarenko I, Hamilton A, Deapen D, Gomez S, Morrow M, Berek
J, Hofer T, Katz S, Ward K, Association of Genetic Testing Results With Mortality
Among Women With Breast Cancer or Ovarian Cancer, J Natl Cancer Inst, 2022 Feb 7;114(2):245-253,
PMID: 34373918, PMCID: PMC8826508 , doi: 10.1093/jnci/djab151
Veenstra C, Braun T, Abrahamse P, Wittman D, Hawley S, Employment outcomes in family
supporters of patients with early stage breast cancer and their association with patients'
health-related quality of life and financial burden, Cancer Med, 2022 Mar;11(5):1324-1335,
PMID: 35112499, PMCID: PMC8894687, doi: 10.1002/cam4.4513
Kohne J, MacLaren G, Cagino L, Boonstra P, Brodie D, Barbaro R, Tracheostomy Practices
and Outcomes in Patients With COVID-19 Supported by Extracorporeal Membrane Oxygenation:
An Analysis of the Extracorporeal Life Support Organization Registry, Crit Care Med,
2022 Sep 1;50(9):1360-1370, PMID: 35607973, PMCID: PMC9380152, doi: 10.1097/CCM.0000000000005579
Li et al, Utility based approach in individualized optimal dose selection using machine
learning methods, Statistics in Medicine, 2022 Jul 20;41(16):2957-2977, PMID: 35343595PMC9233043,
doi: 10.1002/sim.9396
Abghari-Gerst et al, A Comprehensive Assessment of 68Ga-PSMA-11 PET in Biochemically
Recurrent Prostate Cancer: Results from a Prospective Multicenter Study on 2,005 Patients,
Journal of Nuclear Medicine, 2022 Apr;63(4):567-572, PMID: 34326126PMC8973291, doi:
10.2967/jnumed.121.262412
Guo C, Kang J, Johnson T, A spatial Bayesian latent factor model for image-on-image
regression, Biometrics, 2022 Mar;78(1):72-84, PMID: 33368210PMC8236065, doi: 10.1111/biom.13420
Whiteman et al, Bayesian Inference for Brain Activity from Functional Magnetic Resonance
Imaging Collected at Two Spatial Resolutions, Annals of Applied Statistics, 2022 Dec;16(4):2626-2647,
PMID: 36338823PMC9629780, doi: 10.1214/22-aoas1606
Messinger et al, Therapeutic targeting of prenatal pontine ID1 signaling in diffuse
midline glioma, Neuro Oncol, 2022 May 23;noac141, PMID: 35605606, doi: 10.1093/neuonc/noac141
Frame et al, Defibrotide Therapy for SARS-CoV-2 ARDS, Chest, 2022 Apr 9;S0012-3692(22)00593-1,
PMID: 35413279, PMCID: PMC8993696, doi: 10.1016/j.chest.2022.03.046
Wittman et al, TrueNTH Sexual Recovery Intervention for couples coping with prostate
cancer: Randomized controlled trial results, Cancer, 2022 Apr 1;128(7):1513-1522,
PMID: 34985771, doi: 10.1002/cncr.34076
Braun T, Mercier F, Extending the Continual Reassessment Method to accommodate step-up
dosing in Phase I trials, Stat Med , 2022 Sep 10;41(20):3975-3990, PMID: 35662077,
PMCID: PMC9546169, doi: 10.1002/sim.9487
Raj M, Gupta V, Hoodin F, Clingan C, Roslin C, Yahng L, Braun T, Choi S, Evaluating
mobile Health technology use among cancer caregivers in the digital era, Digital Health,
2022 Jun 22;8:20552076221109071, PMID: 35769358, PMCID: PMC9234853, doi: 10.1177/20552076221109071
Qazilbash M, Saini N, Cha S, Wang Z, Stadtmauer E, Baladandayuthapani V, Lin H, Tross
B , Honhar M, Rao S, Kim K, Popescu M, Szymura S, Zhang T, Anderson A, Bashir Q, Shpall
E, Orlowski R, Levine B, Kerr N, Garfall A, Cohen A, Vogl D, Dengel K, June C, Champin
R, Kwak L, A randomized phase 2 trial of idiotype vaccination and adoptive autologous
T-cell transfer in patients with multiple myeloma, Blood, 2022 Mar 3;139(9):1289-1301,
PMID: 34521108, PMCID: PMC8900281 , doi: 10.1182/blood.2020008493
Tanaka I, Dayde D, Tai M, Mori H, Solis L, Tripahi S, Fahrmann J, Unver N, Parhy G,
Jain R, Parra E, Murakami Y, Aguilar-Bonavides C, Mino B., Celiktas M, Shillon D,
Casabar J, Nakatochi M, Stingo F, Baladandayuthapani V et al, SRGN-Triggered Aggressive
and Immunosuppressive Phenotype in a Subset of TTF-1-Negative Lung Adenocarcinomas,
J Natl Cancer Inst, 2022 Feb 7;114(2):290-301, PMID: 34524427, PMCID: PMC8826620 ,
doi: 10.1093/jnci/djab183
Ni Y, Baladandayuthapani V, Vannucci M, Stingo F, Bayesian graphical models for modern
biological applications, Stat Methods Appt, 2022;31(2):197-225, PMID: 35673326, PMCID:
PMC9165295, doi: 10.1007/s10260-021-00572-8
Ma V, Perera C, Sun Y, Sitto M, Waninger J, Warrier G, Green M, Fecher L, Lao C, Early
Response Assessment in Advanced Stage Melanoma Treated with Combination Ipilimumab/Nivolumab,
Front Immunology, 2022 Jul 6;13:860421, PMID: 35874737, PMCID: PMC9296775, doi: 10.3389/fimmu.2022.860421
Hirschtick J, Cook S, Patel A, Barnes G, Arenberg D, Bondarenko I, Levy D, Jeon J,
Medoza E, Meza R, Fleischer N, Longitudinal associations between exclusive and dual
use of electronic nicotine delivery systems and cigarettes and self-reported incident
diagnosed cardiovascular disease among adults, Nicotine Tob Res, 2022 Jul 30;ntac182,
PMID: 35907264, PMCID: , 2022 Jul 30;ntac182
Li G, Xu S, Yang S, Wu C, Zhang L, Wang H, An immune infiltration-related long non-coding
RNAs signature predicts prognosis for hepatocellular carcinoma, Front Genet, 2022
Dec 8;13:1029576, PMID: 36568382, PMCID: PMC9773198, doi: 10.3389/fgene.2022.1029576
Ma L, Li G, Yang T, Zhang L, Wang X, Xu X, Hi H, An inhibitor of BRD4, GNE987, inhibits
the growth of glioblastoma cells by targeting C-Myc and S100A16, Cancer Chemother
Pharmacol, 2022 Dec;90(6):431-444, PMID: 36224471, PMCID: PMC9637061, doi: 10.1007/s00280-022-04483-7
Lee J, Wang N, Turk S, Mohammed S, Lobo R, Kim J, Liao E, Camelo-Piragua S, Kim M,
Junck L, Bapuraj J, Srinivasan A, Rao A, Discriminating Pseudoprogression and True
Progression in Diffuse Infiltrating Glioma using Multi-parametric MRI data through
Deep Learning. Scientific Reports, 2020;10(1):20331, PMID: 33230285 Steele, N.G, et
al. Inhibition of Hedgehog signaling alters fibroblast composition in pancreatic cancer.
Clinical Cancer Research (2020). (in press)
Caissie A, Mierzwa M, Fuller C et al. Radiotherapy (RT) Patterns Of Practice Variability
Identified As A Challenge To Real-World Big Data: Recommendations From The Learning
From Analysis Of Multicenter Big Data Aggregation (LAMBDA) Consortium. International
Journal of Radiation Oncology*Biology*Physics. 2020;108(3):e773-e774. doi:10.1016/j.ijrobp.2020.07.224
Steele N, Carpenter E, Kemp S et al. Multimodal mapping of the tumor and peripheral
blood immune landscape in human pancreatic cancer. Nat Cancer. 2020;1(11):1097-1112.
doi:10.1038/s43018-020-00121-4
Carpenter E, Steele N, Kemp S et al. S0002 Developing a Multimodal Platform for Precision
Medicine Using Endoscopic Fine Needle Biopsies in Pancreatic Cancer. American Journal
of Gastroenterology. 2020;115(1):S1-S1. doi:10.14309/01.ajg.0000697892.97250.42
Li T, Tripathi A, Yu F, Sherman D, Rao A. DDAP: docking domain affinity and biosynthetic
pathway prediction tool for type I polyketide synthases.Bioinformatics. 2019. doi:10.1093/bioinformatics/btz677
Mayo C, Mierzwa M, Moran J et al. Combination of a Big Data Analytics Resource System
With an Artificial Intelligence Algorithm to Identify Clinically Actionable Radiation
Dose Thresholds for Dysphagia in Head and Neck Patients. Adv Radiat Oncol. 2020;5(6):1296-1304.
doi:10.1016/j.adro.2019.12.007
Bankhead III A, McMaster T, Wang Y, Boonstra PS, Palmbos PL: “TP63 Isoform Expression is Linked
with Distinct Clinical Outcomes in Cancer” EBioMedicine 2020, 51, 10256.
Beeler WH, Bellile EL, Casper KA, Jaworski E, Burger NJ, Malloy KM, Spector ME, Shuman AG, Rosko A, Stucken
CL, Chinn SB, Dragovic AF, Chapman CH, Owen D, Jolly S, Bradford CR, Prince MEP, Worden
FP, Jagsi R, Mierzwa ML, Swiecicki PL: “Patient-reported financial toxicity and adverse
medical consequences in head and neck cancer”, Oral Oncol, 101:104521, doi: 10.1016/j.oraloncology.2019.104521,
Epub ahead of print, PMID: 31877502.
Caram MEV, Ross R, Lin P, Mukherjee B: “Factors Associated With Use of Sipuleucel-T to Treat Patients With Advanced Prostate
Cancer” JAMA Open Network, 2 (4), e192589-e192589. 2019.
Cheng, W, Taylor JMG, Gu T, Tomlins SA, Mukherjee B “Informing a Risk Prediction Model for Binary Outcomes with External Coefficient
Information” Journal of Royal Statistical Society, 2019 Jan, 68(1): 121-139. PMC6519970.
Das P, Peterson C, Do K, Akbana R, Baladandayuthapani V: "NExUS: Bayesian simultaneous network estimation across unequal sample sizes”, Bioinformatics,
btz636, 2019. https://doi.org/10.1093/bioinformatics/btz636
Dess RT, Hartman HE, Mahal BA, Soni PD, Jackson WC, Schipper MJ*, Spratt DE*. *Contributed Equally: “Association of Black Race with Prostate Cancer-Specific
and Other-Cause Mortality” JAMA Oncology: 2019. PMC6547116.
Dewaraja YK, Devasia T, Kaza RK, Mikell JK, Owen D, Roberson PL and Schipper MJ: “Accurately predicting tumor control in 90Y radioembolization by logit models with
PET/CT based dose metrics” Journal Nuclear Medicine: 2019. PMC6954459.
Ettel M, Zhao L, Schechter S, Shi J; “Expression and prognostic value of NSD1 and SETD2 in pancreatic
ductal adenocarcinoma and its precursor lesions.” Pathology. 2019. PMC6544165.
Ferrer-Torres D, Nancarrow DJ, Steinberg H, Wang Z, Kuick R, Weh KM, Mills RE, Ray D, Ray P, Lin J, Chang AC, Reddy RM, Orringer MB, Canto MI,
Shaheen NJ, Kresty LA, Chak A, Wang TD, Rubenstein JH, Beer DG. “Constitutively Higher
Level of GSTT2 in Esophageal Tissues From African Americans Protects Cells Against
DNA Damage” Gastroenterology. 2019 Apr;156(5):1404-1415.PMCID: PMC6441633.
Frydrych L, Ulintz P, Bankhead III A, Greenson J, Maguire L, Sifuentes CJ, Fearon E, Hardiman KM: “Rectal Cancer Sub-Clones
Respond Differentially to Neoadjuvant Therapy” Neoplasia 2019, 21(10):1051-1062.
Gates EDH, Lin JS, Weinberg JS, Hamilton J, Prabhu SS, Hazle JD, Fuller GN, Baladandayuthapani V, Fuentes D, Schellingerhout D: “Guiding the first biopsy in glioma patients using
estimated Ki-67 maps derived from MRI: conventional versus advanced imaging”, Neuro
Oncol, 2019, 21(4): 527-536.
Hawkins PG, Sun Y, Dess RT, Jackson WC, Sun G, Bi N, Tewari M, Hayman JA, Kalemkerian
GP, Gadgeel SM, Lawrence TS, Haken RKT, Matuszak MM, Kong FS, Schipper MJ, Jolly S: “Circulating microRNAs as biomarkers of radiation-induced cardiac toxicity
in non-small-cell lung cancer.” J Cancer Res Clin Oncol: 2019. PMC6956699.
Kamdem LK, Xi J, Clark BL, Gregory BJ, Kidwell KM, Storniolo AM, Stearns V, Hayes DF, Gersch CL, Rae JM, Henry NL, Hertz DL; “Exemestane
may be less detrimental than letrozole to bone health in women homozygous for UGT2B17*2
gene deletion.” Breast Cancer Research and Treatment, 2019. PMC6534458.
Katz SJ, Bondarenko I, Ward KC.: “Association of attending surgeon with variation in the receipt of genetic
testing after diagnosis of breast cancer “(vol 153, pp 909, 2018). JAMA Surgery. ,154(3):
p.272, 2019.
Kim MM, Speers C, Li P, Schipper M, Junck L, Leung D, Orringer D, Heth J, Umemura Y, Spratt DE, Wahl DR, Cao Y, Lawrence
TS, Tsien CI: “Dose-intensified chemoradiation is associated with altered patterns
of failure and favorable survival in patients with newly diagnosed glioblastoma.”
J Neurooncol: 2019. PM30977058. [Epub ahead of print]
Kim RY, Helman JI, Braun TM, and Ward BB. “Does Perineural Invasion, a Negative Predictor of Outcome in Oral Squamous
Cell Carcinoma, Have Site-Specific Correlation?” Head & Neck (77): 852-858, 2019.
Kim S, Wang M, Tyrer JP, Jensen A, Wiensch A, Liu G, Lee AW, Ness RB, Mukherjee B: “A comprehensive gene–environment interaction analysis in Ovarian Cancer using genome‐wide
significant common variants” International Journal of Cancer, 144 (9), 2192-2205.
2019.
Lee W, Miranda MF, Rausch P, Baladandayuthapani V, Fazio M, Downs JC, Morris JS: “Bayesian Semiparametric Functional Mixed Models for
Serially Correlated Functional Data, with Application to Glaucoma Data”, J AM Stat
Assoc, 2019, 114(526): 495-513.
Lu T, Bankhead III A, Ljungman M, Neamati N. “Multi-omics profiling reveals key signaling pathways in
ovarian cancer controlled by STAT3” Theranostics 2019; 9(19):5478-5496.
Luo X, Donnelly CR, Gong W, Heath BR, Hao Y, Donnelly LA, Moghbeli T, Tan YS, Lin
X, Bellile E, Kansy BA, Carey TE, Brenner JC, Cheng L, Polverini PJ, Morgan MA, Wen H, Prince ME,
Ferris RL, Xie Y, Young S, Wolf GT, Chen Q, Lei YL: “HPV16 drives cancer immune escape
via NLRX1-mediated degradation of STING”, J Clin Invest, Epub ahead of print, doi:
10.1172/JCI129497, PMID: 31874109.
Ma X, Kang X, He L, Zhou J, Zhou J, Sturm MB, Beer DG, Kuick RD, Nancarrow DJ, Appelman HD, Pang Z, Li W, Zhang C, Zhang W, Zhang Y, Wang TD, Li M.
“Identification of tumor specific peptide as EpCAM ligand and its potential diagnostic
and therapeutic clinical application” Mol Pharm. 2019 May 6;16(5):2199-2213. PMID:
30974945.
Maity AK, Bhattacharya A, Ballick BK, Baladandayuthapani V: “Bayesian data integration and variable selection for pan-cancer survival prediction
using protein expression data”, Biometrics, 2019, Epub ahead of print, PMID: 3139300.
Manasanch EE, Han G, Mathur R, Qing Y, Zhang Z, Lee H, Weber DM, Amini B, Berkova
Z, Eterovic K, Zhang S, Zhang J, Song X, Mao X, Morgan M, Feng L, Baladandayuthapani V, Futreal A, Wang L, Neelapu SS, Orlowski RZ: “A pilot study of pembrolizumab in smoldering
myeloma: report of the clinical, immune and genomic analysis”, Blood Adv, 2019, 3(15):
2400-2408.
Manton T, Tillman B, McHugh J, Bellile E, McLean S, McKean E. “Sinonasal Melanoma: A Single Institutional Analysis and Future
Directions” J Neurol Surg B Skull Base. 2019 Oct;80(5):484-492. doi: 10.1055/s-0038-1676355.
PMCID: PMC6748852.
Marisetty AL, Lu L, Veo BL, Liu B, Coarfa C, Kamal MM, Kassem DH, Irshad K, Lu Y,
Gumin J, Henry V, Paulucci-Holthauzen A, Rao G, Baladandayuthapani V, Lang FF, Fuller GN, Majumder S: ” REST-DRD2 mechanism impacts glioblastoma stem
cell-mediated tumorigenesis”, Neuro Oncol, 2019, 21(6): 775-785.
McCool K, Freeman ZT, Zhai Y, Wu R, Hu K, Liu CJ, Tomlins SA, Fearon ER, Magnuson B, Kuick R, Cho KR. “Murine Oviductal High-Grade Serous Carcinomas Mirror the Genomic Alterations,
Gene Expression Profiles, and Immune Microenvironment of Their Human Counterparts”
Cancer Res. 2019 Dec 5. doi: 10.1158/0008-5472.CAN-19-2558. [Epub ahead of print]
PMID:31806642.
Michmerhuizen NL, Leonard E, Matovina C, Harris M, Herbst G, Kulkarni A, Zhai J, Jiang H, Carey TE, Brenner JC, “Rationale for using irreversible EGFR Inhibitors in combination
with PI3K inhibitors for advanced Head and Neck Squamous Cell Carcinoma.” Molecular
Pharmacology, doi: 10.1124/mol.118.115162, 2019. PMC6442321.
Muenz D, Taylor JMG, Braun T: “Phase I/II Trial Design for Biologic Agents using CAR Models for Toxicity & Efficacy.”
Journal of the Royal Statistical Society, Series C (68): 331-345, 2019.
Nez FJ, Mendez FM, Kadiyala P, Alghamri MS, Savelieff MG, Garcia-Fabiani MB, Haase
S, Koschmann C, Calinescu AA, Kamran N, Saxena M, Patel R, Carney S, Guo MZ, Edwards
M, Ljungman M, Qin T, Sartor MA, Tagett R, Venneti S, BrosnanCashman J, Meeker A, Gorbunova V, Zhao L, Kremer DM, Zhang L, Lyssiotis CA, Jones L, Herting CJ, Ross JL, Hambardzumyan D,
Hervey-Jumper S, Figueroa ME, Lowenstein PR, Castro MG; “IDH1-R132H acts as a tumor
suppressor in glioma via epigenetic up-regulation of the DNA damage response.” Sci
Transl Med., 11(479). 2019.
Ni Y, Stingo FC, Ha MJ, Akbani R, Baladandayuthapani V: “Bayesian Hierarchical Varying-sparsity Regression Models with Application to Cancer
Proteogenomics”, J Am Stat Assoc, 2019, 114(525): 48-60.
Palmbos P, Wang Y, Bankhead III A, Kelleher A, Wang L, Yang H, Ahmet M, Gumkowski E, Welling S, Magnuson B, Leflein J, Lorenzatti G, Abel E, Dziubinski M, Urs S, Day M, Ljungman M, Simeone
D, “ATDC mediates a TP63-regulated basal cancer invasive program” Oncogene, 1476-5594,
2019. PMC6290910.
Rozek L., Virani S., Bellile E., Taylor JMG, Sartor M., Zarins K., Virani A., Cote C., Worden F., Prince M., McLean S., Duffy
S., Yoo G., Saba N., Shin D., Kucuk O., Wolf G.T., “Soy Isoflavone Supplementation
Increases Long Interspersed Nucleotide Element-1 (LINE-1) Methylation in Head and
Neck Squamous Cell Carcinoma”, Nutrition and Cancer, 71(5), 772-780, 2019.
Spector ME, Bellile E, Amlani L, Zarins K, Smith J, Brenner JC, Rozek L, Nguyen A, Thomas D, McHugh JB,
Taylor JMG, Wolf GT. “Prognostic Value of Tumor-Infiltrating Lymphocytes in Head and Neck Squamous
Cell Carcinoma” JAMA Otolaryngol Head Neck Surg. 2019 Sep 5;. doi: 10.1001/jamaoto.2019.2427.
Epub ahead of print. PMCID: PMC6735419.
Tang J, Feng Y, Kuick R, Green M, Green M, Sakamoto N, Kurosu Y, Lin J, Cho KR, Fearon ER. “Trp53 null and
R270H mutant alleles have comparable effects in regulating invasion, metastasis, and
gene expression in mouse colon tumorigenesis” Lab Invest. 2019 Oct;99(10):1454-1469.
Epub 2019 May 31. PMCID:PMC6759392.
Taylor JMG, Shuman AG, Beesley LJ, “Individualized prognostic calculators in the precision oncology
era” Oncotarget 10 (4), 415. 2019.
Veenstra C, Wallner L, Abrahamse P; Janz N, Katz S, Hawley S; “Understanding the engagement of key decision support
persons in patient decision making around breast cancer treatment.” Cancer, 2019.
PMC6486440.
Wallner L, Li Y, McLeod M, Gargaro J, Kurian A, Jagsi R, Radhakrishnan A, Hamilton A, Ward K, Hawley S, Katz
S. “Primary care provider–reported involvement in breast cancer treatment decisions.” Cancer,
2019, 125: 1815-1822. PMC6509002.
Wang Y, Kim TH, Fouladdel S, Zhang Z, Soni P, Qin A, Zhao L, Azizi E, Lawrence TS, Ramnath N, Cuneo KC, Nagrath S; “PD-L1 Expression in Circulating
Tumor Cells Increases during Radio(chemo)therapy and Indicates Poor Prognosis in Non-small
Cell Lung Cancer.” Sci Rep., 9(1):566. 2019.
Wang Y, Sessine MS, Zhai Y, Tipton C, McCool K, Kuick R, Connolly DC, Fearon ER, Cho KR. “Lineage tracing suggests that ovarian endosalpingiosis
does not result from escape of oviductal epithelium” J Pathol. 2019 Oct;249(2):206-214.
Epub 2019 Jul 8. PMID:31131879.
Wang F, Duan X, Chen J, Gao Z, Zhou J, Wu X, Chang TS, Lee M, Li G, Nusrat A, Kuick R, Appelman HD, Wang TD. “Integrated Imaging Methodology Detects Claudin-1 Expression
in Premalignant Nonpolypoid and Polypoid Colonic Epithelium in Mice” Clin Transl Gastroenterol.
2020 Jan 9. doi: 10.14309/ctg.0000000000000089. [Epub ahead of print] PMID:31922993.
Wu X, Zhou J, Wang F, Meng X, Chen J, Chang TS, Lee M, Li G, Li X, Appelman HD, Kuick R, Wang TD. “Detection of colonic neoplasia in vivo using near-infrared-labeled peptide
targeting cMet” Sci Rep. 2019 Nov 29;9(1):17917. PMCID:PMC6884535.
Xu S, Liu Y, Yang K, Wang H, Shergalis A, Kyani A, Bankhead III A, Tamura S, Yang S, Wang X, Wang CC, Rehemtulla A, Ljungman M, Neamati N. “Inhibition
of protein disulfide isomerase in glioblastoma causes marked downregulation of DNA
repair and DNA damage response genes” Theranostics 2019; 9(8):2282-2298.
Zhou Q, Li H, Li Y, Tan M, Fan S, Cao C, Meng F, Zhu L, Zhao L, Guan MX, Jin H, Sun Y; “Inhibiting neddylation modification alters mitochondrial
morphology and reprograms energy metabolism in cancer cells.” JCI Insight, 4(4):121582.
2019.
Zick S, Sen A, Hassatt A, Schrepf A, Wyatt G, Murphy S, Arnedt J, Harris R; “Impact of Self-Acupressure
on Co-Occurring Symptoms in Cancer Survivors” JNCI Cancer Spectrum ; 2 (4); 2019.
Abel EV, Goto M, Magnuson B, Abraham S, Ramanathan N, Hotaling E, Alaniz AA, Kumar-Sinha
C, Dziubinski ML, Urs S, Wang L, Shi J, Waghray M, Ljungman M, Crawford HC, Simeone
DM. “HNF1A is a novel oncogene that regulates human pancreatic cancer stem cell properties”.
2018. Elife. PMID: 3007447.
Altan M, Kidwell KM, Pelekanou V, Carvajal-Hausdorf DE, Schalper KA, Toki M, Thomas
DG, Sabel MS, Hayes DF, Rimm DL; “Associations of B7-H4, PD-L1 and tumor infiltrating
lymphocytes with outcomes in breast cancer.” NPJ Breast Cancer. Dec 10: 4:40, 2018.
Anwar T, Arellano-Garcia C, Ropa J, Chen Y, Kim H, Yoon E, Grigsby S, Basrur V, Nesvizhskii
A, Muntean A, Gonzalez M, Kidwell K, Nikolovska-Coleska Z, Kleer C; “p38-mediated
phosphorylation at T367 induces EZH2 cytoplasmic localization to promote breast cancer
metastasis.” Nature Communications. 9(1):2801, 2018.
Banerjee M, Reyes-Gastelum D, Haymart MR. “Treatment-free Survival in Patients with
Differentiated Thyroid Cancer.” Journal of Clinical Endocrinology and Metabolism,
103:2720-2727, 2018. PMID: 29788217.
Beesley LJ, Morgan TM, Spratt DE, Singhal U, Feng FY, Furgal AC, Jackson WC, Daignault
S, Taylor JMG: “Individual and Population Comparisons of Surgery and Radiotherapy
Outcomes in Prostate Cancer Using Bayesian Multistate Models.”, JAMA Open Network,
2(2): e187765. 2018, PMC6484613.
Beesley LJ, Hawkins P, Amlani LH, Bellile E, Casper KA, Chinn SB, Eisbruch A, Mierzwa
ML, Spector ME, Wolf GT, Shuman AG, Taylor JMG: “Individualized Survival Prediction
for Patients with Oropharyngeal Cancer in the Human Papillomavirus Era” Cancer, 125(1):68-78,
2018. PMC6309492.
Bhave MA, Speth KA, Kidwell KM, Lyden A, Alsamarraie C, Murphy S, Henry NL; “Effect
of aromatase inhibitor therapy on sleep and activity patterns in early stage breast
cancer.” Clinical Breast Cancer. 18(2): 168-174, 2018.
Caram M, Wang S,Tsao P, Griggs JJ, Miller DC, Hollenbeck BK, Lin P, Mukherjee B: “Patient
and Provider Variables Associated with Variation in the Systemic Treatment of Advanced
Prostate Cancer” Urology Practice, 10.1097/UPJ. 0000000000000020. 2018.
Caram MEV, Estes JP, Griggs JJ, Lin P, Mukherjee B: “Temporal and geographic variation
in the systemic treatment of advanced prostate cancer” BMC cancer 18 (1), 258. 2018.
Castillo CG, Kauffman CA, Zhai J, Jiang H, Agozino SM, Miceli MH: “Testing the performance
of a prototype lateral flow device using bronchoalveolar lavage fluid for the diagnosis
of invasive pulmonary aspergillosis in high-risk patients.” Mycoses, 61(1):4-10, 2018,
PMID: 28905439.
Colacino JA, Azizi E, Brooks MD, Harouaka R, Fouladdel S, McDermott SP, Lee M, Hill
D, Madden J, Boerner J, Cote ML, Sartor MA, Rozek LS, Wicha MS: “Heterogeneity of
Human Breast Stem and Progenitor Cells as Revealed by Transcriptional Profiling.”
Stem Cell Reports, 10(5):1596-1609, 2018, PMC5995162.
Cuneo KC, Morgan MA, Griffith KA, Hawkins PG, Greenson JK, Ben-Josef E, Lawrence TS,
and Zalupski MM: “Prognostic Value of c-MET Expression in Patients with Pancreatic
Cancer Receiving Adjuvant and Neoadjuvant Chemoradiation Therapy.” Int J Radiat Oncol
Biol Phys, 100(2):490-497, 2018, PMID: 29229329.
Davis EJ, Griffith KA, Kim EJ, Ruch JM, McDonnell KJ, and Zalupski MM: “A phase II
study of biweekly cisplatin, fixed dose rate gemcitabine and infusional 5-fluorouracil
in patients with metastatic pancreatic and biliary cancers.” Am J Clin Oncol, 41(2):128-132,
2018, PMC4854803.
Dess RT, Devasia TP, Aghdam N, Jackson WC, Soni PD, Smith CP, Mitchell AL, Suy S,
Hamstra DA, Jolly S, Nguyen PL, Feng FY, Schipper MJ, Skolarus TA, Miller DC, Wittmann
DA, Collins SP, Spratt DE: “Patient-Reported Sexual Aid Utilization and Efficacy After
Radiation Therapy for Localized Prostate Cancer.” Int J Radiat Oncol Biol Phys, 101(2):376-386,
2018, PMID: 29487023.
Dess RT, Hartman HE, Aghdam N, Jackson WC, Soni PD, Abugharib AE, Suy S, Desai NB,
Zumsteg ZS, Mehra R, Morgan TM, Feng FY, Hamstra DA, Schipper MJ, Collins SP, Spratt
DE: “Erectile Function after Stereotactic Body Radiotherapy for Prostate Cancer: Comparison
to Nerve-Sparing Prostatectomy and Conventional Radiotherapy.” BJU Int, 121(1):61-68,
2018, PMID: 28710895.
El Naqa I, Ruan D, Valdes G, Dekker A, McNutt T, Ge Y, Wu QJ, Oh JH, Thor M, Smith
W, Rao A, Fuller C, Xiao Y, Manion F, Schipper M, Mayo C, Moran JM, Ten Haken R: Machine
learning and modeling: Data, validation, communication challenges. Med Phys 45(10):
e834-e840, 2018. PMC6181755.
Feng M, Suresh K, Schipper MJ, Bazzi L, Ben-Josef E, Matuszak MM, Parikh ND, Welling
TH, Normolle D, Ten Haken RK, Lawrence TS: “Individualized Adaptive Sterotactic Body
Radiotherapy (SBRT) for Liver Tumors in Patients at High Risk for Liver Damage: A
Phase 2 Clinical Trial.” JAMA Oncol, 4(1):40-47, 2018, PMC5766368.
Ferrer-Torres D, Nancarrow DJ, Steinberg H, Wang Z, Kuick R, Weh KM, Mills RE, Ray
D, Ray P, Lin J, Chang AC, Reddy RM, Orringer MB, Canto MI, Shaheen NJ, Kresty LA,
Chak A, Wang TD, Rubenstein JH, Beer DG: “Constitutively Higher Level of GSTT2 in
Esophageal Tissues From African Americans Protects Cells Against DNA Damage.” Gastroenterology,
S0016-5085(18)35401-5, Dec 12 2018. PMID: 30578782.
Fritsche L, Beesley L, VandeHaar P, Peng R, Salvatore M, Zawistowski M, Taliun S,
LeFaive J, Kaleba E, Klumpner T, Moser S, Blanc V, Mukherjee B: “Exploring various
polygenic risk scores for skin cancer in the phenomes of the Michigan genomics initiative
and the UK Biobank with a visual catalog: PRSWeb”. Plos Genetics, 2019 June 13; 15(6):e1008202.
Hawkins PG*, Boonstra PS*, Hobson ST, Hayman JA, Ten Haken RK, Matuszak MM, Stanton
P, Kalemkerian GP, Lawrence TS, Schipper MJ, and Jolly S; ”Prediction of radiation
esophagitis in non-small cell lung cancer using clinical factors, dosimetric parameters,
and pretreatment cytokine levels.” Translational Oncology 11, 102–108. 2018. *Equal
contribution authors PMC6002355.
Hawkins PG, Tang M, Vineberg KA, Young L, Kovach K, Lee C, Maturen KE, Uppal S, Owen
D, Schipper MJ, Prisciandaro JI, Jolly S: “Dosimetric impact of interfractional organs
at risk variation during high-dose rate interstitial brachytherapy for gynecologic
malignancies.” Med Dosim: 2018. PM30336971.
Healy MA, Morris AM, Abrahamse P, Ward KC, Kato I, Veenstra CM: “The accuracy of chemotherapy
ascertainment among colorectal cancer patients in the surveillance, epidemiology,
and end results registry program.” BMC Cancer, 18(1):481, 2018,PMC5924509.
Heiden BT, Patel N, Nancarrow DJ, Hermann M, Brown RKJ, Orringer MB, Lin J, Chang
AC, Carrott PW, Lynch WR, Zhao L, Beer DG, Reddy RM; “Positron Emission Tomography
18F-Fluorodeoxyglucose Uptake Correlates with KRAS and EMT Gene Signatures in Operable
Esophageal Adenocarcinoma.” J Surg Res., 232:621-628. 2018.
Henry NL, Kidwell KM, Alsamarraie C, Bridges C, Kwiatkowski Clauw D, Smith E, Williams
D; “Pilot study of a proactive self-management program for symptom management in patients
with breast cancer.” Journal of Clinical Oncology Clinical Cancer Informatics. 2:1-12,
2018.
Hertz DL, Kidwell KM, Vangipuram K, Li F, Pai MP, Burness M, Griggs JJ, Schott AF,
Van Poznak C, Hayes DF, Smith EML, Henry NL; “Paclitaxel Plasma Concentration After
the First Infusion Predicts Treatment-Limiting Peripheral Neuropathy.” Clinical Cancer
Research. 24(15): 3602-3610, 2018, PMC6386454.
Hoban CW, Beesley LJ, Bellile EL, Sun Y, Spector ME, Wolf GT, Taylor JMG, Shuman AG:
“Individualized outcome prognostication for patients with laryngeal cancer.” Cancer,
12494):706-716, 2018, PMC5800991.
Hussain M, Daighault-Newton S, Twardowski PW, Albany C, Stein MN, Kunju LP, Siddiqui
J, Wu YM, Robinson D, Lonigro RJ, Cao X, Tomlins SA, Mehra R, Cooney KA, Montgomery
B, Antonarakis ES, Shevrin DH, Corn PG, Whang YE, Smith DC, Caram MV, Knudsen KE,
Stadler WM, Feng FY, Chinnaiyan AM: “Targeting Androgen Receptor and DNA Repair in
Metastatic Castration-Resistant Prostate Cancer: Results From NCI 9012.” 36(10):991-999,
J Clin Oncol, PMID: 29261439.
Jackson WC, Dess RT, Litzenberg DW, Li P, Schipper M, Rosenthal SA, Chang GC, Horwitz
EM, Price RA, Michalski JM, Gay HA, Wei JT, Feng M, Feng FY, Sandler HM, Wallace RE,
Spratt DE, Hamstra DA: A multi-institutional phase 2 trial of prostate stereotactic
body radiation therapy (SBRT) using continuous real-time evaluation of prostate motion
with patient-reported quality of life. Pract Radiat Oncol 8(1): 40-47, 2018. PM29304991.
Jackson WC, Suresh K, Tumati V, Allen SG, Dess RT, Salami SS, George A, Kaffenberger
SD, Miller DC, Hearn JWD, Jolly S, Mehra R, Hollenbeck BK, Palapattu GS, Schipper
M, Feng FY, Morgan TM, Desai NB, Spratt DE: “Intermediate Endpoints After Postprostatectomy
Radiotherapy: 5-Year Distant Metastasis to Predict Overall Survival.” Eur Urol: 2018.
PM29306514.
Jackson WC, Tao Y, Mendiratta-Lala M, Bazzi L, Wahl DR, Schipper MJ, Feng M, Cuneo
KC, Lawrence TS, Owen D: “Comparison of Stereotactic Body Radiation Therapy and Radiofrequency
Ablation in the Treatment of Intrahepatic Metastases.” Int J Radiat Oncol Biol Phys
100(4): 950-958, 2018. PM29485074.
Jagsi R, Griffith KA, Bellon J, Woodward W, Horton J, Ho A, Feng F, Speers C, Overmoyer
B, Sabel M, Schott A, and Pierce LJ for the Translational Breast Cancer Research Consortium:
“Concurrent Veliparib with Chest Wall and Nodal Radiation Therapy in Patients with
Inflammatory or Locoregionally Recurrent Breast Cancer: The TBCRC 024 Phase I Multicenter
Study.” J Clin Oncol, 36(13):1317-1322, 2018, PMID: 29558281.
Jagsi R, Ward K, Abrahamse P, Wallner L, Kurian A, Hamilton A, Katz S, Hawley S, “Unmet
need for clinician engagement regarding financial toxicity after diagnosis of breast
cancer.” Cancer, 124(18)3668-3676. 2018.
Jin X, Qin T, Zhao M, Bailey N, Liu L, Yang K, Ng V, Higashimoto T, Coolon R, Ney
G, Figueroa ME, Li Q: “Oncogenic N-Ras and Tet2 haploinsufficiency collaborate to
dysregulate hematopoietic stem and progenitor cells.” Blood Adv, 2(11):1259-1271,
2018, PMC5998937.
Kanters AE, Morris AM, Abrahamse PH, Mody L, Suwanabol PA: “The Effect of Peer Support
on Colorectal Cancer Patients' Adherence to Guideline-Concordant Multidisciplinary
Care.” Dis Colon Rectum, 61(7):817-823, 2018, PMC5992023.
Katz S, Ward K, Hamilton A, Abrahamse P, Hawley S, Kurian A, “Association of Germline
Genetic Test Type and Results With Patient Cancer Worry After Diagnosis of Breast
Cancer.” JCO Precision Oncology, 2018.
Kidwell KM, Postow MA, Panageas KS; “Sequential, Multiple Assignment, Randomized Trial
Designs in Immuno-Oncology Research.” Clinical Cancer Research. 24(4): 730-736, 2018.
Koneva LA, Zhang Y, Virani S, Hall PB, McHugh JB, Chepeha DB, Wolf GT, Carey TE, Rozek
LS, Sartor MA: “HPV Integration in HNSCC Correlates with Survival Outcomes, Immune
Response Signatures, and Candidate Drivers.” Mol Cancer Res, 16(1):90-102, 2018, PMC5752568.
Kung TA, Kidwell KM, Speth K, Pang JC, Jagsi R, Levi B, Newman LA, Wilkes EG, Momoh
AO; “Radiation-Induced Skin Changes after Post-Mastectomy Radiation Therapy: A Pilot
Study on Indicators for Timing of Delayed Breast Reconstruction.”; Journal of Reconstructive
Microsurgery. 35(3): 209-215, 2018.
Kurian AW, Bondarenko I, Jagsi R, Friese CR, McLeod CM, Hawley ST, Hamilton AS, Ward
KC, Hofer TP, Katz SJ. “Recent Trends in Chemotherapy Use and Oncologists’ Treatment
Recommendations for Early-Stage, Breast Cancer.” J Natl Cancer Inst, 110(5):493-500,
2018, PMC5946952.
Kurian AW, Ward KC, Hamilton AS, Deapen DM, Abrahamse P, Bondarenko I, Li Y, Hawley
ST, Morrow M, Jagsi R, Katz SJ: “Uptake, Results, and Outcomes of Germline Multiple-Gene
Sequencing After Diagnosis of Breast Cancer.” JAMA Oncol. 4(8)1066-1072, 2018, PMID:
29801090.
Lee KL, Janz NK, Zikmund-Fisher BJ, Jagsi R, Wallner LP, Kurian AW, Katz SJ, Abrahamse
P, Hawley ST: “What Factors Influence Women's Perceptions of their Systemic Recurrence
Risk after Breast Cancer Treatment?” Med Decis Making, 38(1):95-106, 2018, PMC5764769.
Li W, Tanikawa T, Kryczek I, Xia H, Li G, Wu K, Wei S, Zhao L, Vatan L, Wen B, Shu
P, Sun D, Kleer C, Wicha M, Sabel M, Tao K, Wang G, Zou W; “Aerobic Glycolysis Controls
Myeloid-Derived Suppressor Cells and Tumor Immunity via a Specific CEBPB Isoform in
Triple-Negative Breast Cancer.” Cell Metab., 28(1):87-103. 2018.
Lin C, Lo M, Moody R, Jiang H, Harouaka R, Stevers N, Tinsley S, Gasparyan M, Wicha
M, Sun D, “Targeting LRP8 inhibits breast cancer stem cells in triple-negative breast
cancer.” Cancer Letters, 438: 165-173. 2018 PMID: 30227220.
Linzey J, Bernard M, Pasternak A, Smith C, Miklja Z, Zhao L, Kumar-Sinha C, Paul A,
Harris N, Robertson P, Hoffman L, Chinnaiyan, Mody R and Koschmann C. “Development
of the CNS TAP tool for the selection of precision medicine therapies in neuro-oncology”
(2018). J Neuro-Oncology, 137 (1): 155-169. 2018.
Litzenberg DW, Muenz DG, Archer PG, Jackson WC, Hamstra DA, Hearn JW, Schipper MJ,
Spratt DE: “Changes in Prostate Orientation Due to Removal of a Foley Catheter.” Med
Phys, 45(4):1369-1378, 2018, PMID: 29474748.
Ludwig ML, Kulkarni A, Birkeland AC, Michmerhuizen NL, Foltin SK, Mann JE, Hoesli
RC, Devenport SN, Jewell BM, Shuman AG, Spector ME, Carey TE, Jiang H, Brenner JC,
“The genomic landscape of UM-SCC oral cavity squamous cell carcinoma cell lines.”
Oral Oncology, 87: 144-151. 2018. PMCID: PMC6349383.
Ma VT, Boonstra PS, Menghrajani K, Perkins C, Gowin KL, Mesa RA, Gotlib JR, and Talpaz,
M; “Treatment with JAK inhibitors in myelofibrosis patients nullifies the prognostic
impact of unfavorable cytogenetics.” Clinical Lymphoma, Myeloma, and Leukemia 18,
e201–e210. 2018. PMC 5927833.
Marcath LA, Kidwell KM, Robinson A, Feng L, Vangipuram K, Schott AF, Pai MP, Hayes
DF, Henry NL, Hertz DL; “Patients Carrying Low-activity CYP2C8 Genotypes have Shorter
Systemic Paclitaxel Exposure.” Pharmacogenomics. 20(2): 95-104, 2018.
Marcath LA, Xi J, Hoylman EK, Kidwell KM, Kraft SL, Hertz DL; “Comparison of nine
tools for screening drug-drug interactions of Oral Oncolytics” Journal of Oncology
Practice. 14(6): 368-374, 2018.
McCulloch MM, Muenz DG, Schipper MJ, Velec M, Dawson LA, Brock KK: “A simulation study
to assess the potential impact of developing normal tissue complication probability
models with accumulated dose.” Adv Radiat Oncol 3(4): 662-672, PMC6200914. 2018.
McMullen ER, Gonzalez ME, Skala SL, Tran M, Thomas D, Djomehri SI, Burman B, Kidwell
KM, Kleer CG; “CCN6 regulates IGF2BP2 and HMGA2 signaling in metaplastic carcinomas
of the breast.” Breast Cancer Research and Treatment. 172(3): 577-586, 2018.
Mendiratta-Lala M, Masch W, Shankar PR, Hartman HE, Davenport MS, Schipper MJ, Maurino
C, Cuneo KC, Lawrence TS, Owen D: “MR Imaging Evaluation of Hepatocellular Carcinoma
Treated with Stereotactic Body Radiation Therapy (SBRT): Long Term Imaging Follow-Up.”
Int J Radiat Oncol Biol Phys: 2018. PM30213751.
Mikell JK, Kaza RK, Roberson PL, Younge KC, Srinivasa RN, Majdalany BS, Cuneo KC,
Owen D, Devasia T, Schipper MJ, Dewaraja YK: Impact of Y PET gradient-based tumor
segmentation on voxel- 90 level dosimetry in liver radioembolization. EJNMMI Phys
5(1): 31, 2018. PM30498973/PMC6265358.
Miller M, Trickey A, Kin C, Hawley S, Abrahamse P, Morris A, “Coordination of Care
in Colorectal Cancer Patients: A Population-Based Study.” Journal of the American
College of Surgeons, 227(4)S141-S142. 2018.
Morrow M, Abrahamse P, Katz SJ: “Trend Analysis on Reoperation After Lumpectomy for
Breast Cancer-Reply.” JAMA Oncol, 4(5):747, 2018, PMID: 29423506.
Morrow M, Jagsi R, McLeod M, Shumway D, Katz S. “Surgeon Attitudes Toward the Omission
of Axillary Dissection in Early Breast Cancer: Has ACOSOG Z0011 Changed Clinical Practice?” JAMA
Oncol, 2018. PMC6248076.
Muller KE, Zhao L, Jorns JM; “Isolated Atypical Lobular Hyperplasia Diagnosed on Breast
Biopsy: Low Upgrade Rate on Subsequent Excision with Long-Term Followup.” Archives
of Pathology and Laboratory Medicine, 142(3):391-395. 2018.
Muenz D, Braun T, Taylor JMG; “Modeling adverse event counts in phase I clinical trials
of a cytotoxic agent”. Clin Trials, 15(4): 386-397, 2018, PMC6053332.
Skala SL, Arps DP, Zhao L, Cha KB, Wang M, Harms PW, Andea AA, Fullen DR, Chan MP;
“Comprehensive histopathological comparison of epidermotropic/dermal metastatic melanoma
and primary nodular melanoma.” Histopathology, 72(3):472-480. 2018.
Owen DR, Boonstra PS , Viglianti B, Balter J, Schipper MJ, Jackson W, El Naqa I, Jolly
S, Ten Haken RK, and Matuszak MM “Modeling patient-specific dose-function response
using SPECT/CT to personalize prediction of radiation-induced lung toxicity.” International
Journal of Radiation Oncology · Biology · Physics 102, 1265–1275; https://doi.org/10.1016/j.ijrobp.2018.05.049,
2018. PMC6202237
Owen DR, Boonstra PS, Viglianti BL, Balter JM, Schipper MJ, Jackson WC, El Naqa I,
Jolly S, Ten Haken RK, Kong FS, Matuszak MM: “Modeling Patient-Specific Dose-Function
Response for Enhanced Characterization of Personalized Functional Damage”. Int J Radiat
Oncol Biol Phys 102(4): 1265-1275, 2018. PM30108006/PMC6202237.
Qin T, Zhang Y, Zarins KR, Jones T, Virani S, Peterson LA, McHugh JB, Chepeha D,Wolf
GT, Laura S Rozek LS, Sartor MA: “Expressed HNSCC variants by HPV-status in a well-characterized
Michigan cohort.” Sci Rep, 8(1):11458, 2018, PMID: 30061624.
Reimers MA., Shango MM, Daignault-Newton S, “Pazopanib with low fat meal (PALM) in
advanced renal cell carcinoma” et al. Invest New Drugs (2018). https://doi.org/10.1007/s10637-018-0692-8
Resnicow K, Patel M, McLeod M, Katz S, Jagsi R. “Physician Attitudes About Cost Consciousness
for Breast Cancer Treatment: Differences by Cancer Sub-specialty.” Breast Cancer Res
Treat, 2018. PMID: 30259283.
Ropa J, Saha N, Chen Z, Serio J, Chen W, Mellacheruvu D, Zhao L, Basrur V, Nesvizhskii
AI and Muntean AG; “PAF1 complex interactions with SETDB1 mediate promoter H3K9 methylation
and transcriptional repression of Hoxa9 and Meis1 in acute myeloid leukemia.” Oncotarget,
9(31):22123-22136. 2018.
Rosko AJ, Birkeland AC, Bellile E, Kovatch KJ, Miller AL, Jaffe CC, Shuman AG, Chinn
SB, Stucken CL, Malloy KM, Moyer JS, Casper KA, Prince MEP, Bradford CR, Wolf GT,
Chepeha DB, Spector ME: “Hypothyroidism and Wound Healing After Salvage Laryngectomy.”
Ann Surg Oncol, 25(5):1288-1295, PMC6002868.
Sapir E, Tao Y, Schipper MJ, Bazzi L, Novelli PM, Devlin P, Owen D, Cuneo KC, Lawrence
TS, Parikh ND, Feng M.: “Stereotactic Body Radiation Therapy as an Alternative to
Transarterial Chemoembolization for Hepatocellular Carcinoma.” Int J Rad Oncol Biol
Phys, 100(1):122-130, 2018, PMC5818982
Schmitd LB, Beesley LJ, Russo N, Bellile EL, Inglehart RC, Liu M, Romanowicz G, Wolf
GT, Taylor JMG, D'Silva NJ: “Redefining Perineural Invasion: Integration of Biology
With Clinical Outcome.” Neoplasia, 22;20(7):657-667, 2018, PMID: 29800815.
Schmit SL, Edlund CK, Schumacher FR, Gong J, Harrison TA, Huyghe JR, Mukherjee B:
“Novel common genetic susceptibility loci for colorectal cancer” JNCI: Journal of
the National Cancer Institute, 111 (2), 146-157. 2018.
Schofield HK, Zeller J, Espinoza C, Halbrook CJ, Del Vecchio A, Magnuson B, Fabo T,
Daylan AEC, Kovalenko I, Lee HJ, Yan W, Feng Y, Karim SA, Kremer DM, Kumar-Sinha C,
Lyssiotis CA, Ljungman M, Morton JP, Galbán S, Fearon ER, Pasca di Magliano M: “Mutant
p53R270H drives altered metabolism and increased invasion in pancreatic ductal adenocarcinoma.”
JCI Insight, 25;3(2). pii: 97422, 2018, PMC5821189.
Sehrawat A, Gao L, Wang Y, Bankhead A 3rd, McWeeney SK, King CJ, Schwartzman J, Urrutia
J, Bisson WH, Coleman DJ, Joshi SK, Kim DH, Sampson DA, Weinmann S, Kallakury BVS,
Berry DL, Haque R, Van Den Eeden SK, Sharma S, Bearss J, Beer TM, Thomas GV, Heiser
LM, Alumkal JJ: “LSD1 activates a lethal prostate cancer gene network independently
of its demethylase function.” Proc Natl Sci USA, 115(18):E4179-E4188, 2018, PMC5939079.
Shankar PR, Kaza RK, Al-Hawary MM, Masch WR, Curci NE, Mendiratta-Lala M, Sakala MD, Johnson
TD, Davenport MS. “Impact of Clinical History on Maximum PI-RADS Version 2 Score:
A Six-Reader 120-Case Sham History Retrospective Evaluation.” Radiology, 2018, PMID:
29664338.
Shergalis A, Bankhead A 3rd, Luesakul U, Muangsin N, Neamati N: “Current Challenges
and Opportunities in Treating Glioblastoma.” Pharmacol Rev, 70(3):412-445, 2018, PMC5907910.
Shi J, Wang X, Lyu L, Jiang H, Zhu HJ: “Comparison of protein expression between human
livers and the hepatic cell lines HepG2, Hep3B, and Huh7 using SWATH and MRM-HR proteomics:
Focusing on drug-metabolizing enzymes.” Drug Metab Pharmacokinet, 33(2):133-140, 2018,
PMID: 29610054.
Shumway DA, Griffith KA, Hawley ST, Katz SJ, Jagsi R: “Patient Views and Correlates
of Radiotherapy Omission in a Population-Based Sample of Older Women with Favorable
Prognosis Breast Cancer.” Cancer, 124(13):2714-2723, 2018, PMID: 29669187.
Spratt DE, Suresh K, Osawa T, Schipper M, Jackson WC, Abugharib A, Lebastchi A, Smith
D, Montgomery JS, Palapattu GS, Priya Kunju L, Wu A, Lew M, Tomlins SA, Chinnaiyan
AM, Weizer AZ, Hafez KS, Kaffenberger SD, Udager A, Mehra R: “Detailed pathologic
analysis on the co-occurrence of non-seminomatous germ cell tumor subtypes in matched
orchiectomy and retroperitoneal lymph node dissections.” Med Oncol, 5(3):21, 2018,
PMID: 29387987.
Sun Y, Hawkins PG, Bi N, Tewari M, Hearn JWD, Hayman JA, Kalemkerian GP, Lawrence
TS, Ten-Haken RK, Matuszak MM, Kong FM, Jolly S, Schipper MJ: “Serum MicroRNA Signature
Predicts Response to High-dose Radiation Therapy in Locally Advanced Non-Small-Cell
Lung Cancer.” Int J Radiat Oncol Biol Phys, 100(1):107-114, 2018, PMC5736451.
Suresh K, Owen D, Bazzi L, Jackson W, Ten Haken RK, Jackson W, Bazzi L, Ten Haken
RK, Lawrence TS, Cuneo K, Feng M, Schipper MJ: “Using Indocyanine Green to Predict
Liver Toxicity After Stereotactic Body Radiotherapy for Primary Hepatocellular Carcinoma.”
Int J Rad Oncol Biol Phys, 100(1):131-137, 2018, PMC5736416.
Svoboda LK, Teh SSK, Sud S, Kerk S, Zebolsky A, Treichel S, Thomas D, Halbrook CJ,
Lee HJ, Kremer D, Zhang L, Klossowski S, Bankhead AR, Magnuson B, Ljungman M, Cierpicki
T, Grembecka J, Lyssiotis CA, Lawlor ER: “Menin regulates the serine biosynthetic
pathway in Ewing sarcoma.” J Pathol, 245(3):324-336, 2018, PMID: 29672864.
Tamura S, Wang Y, Veeneman B, Hovelson D, Bankhead A 3rd, Broses LJ, Lorenzatti Hiles
G, Liebert M, Rubin JR, Day KC, Hussain M, Neamati N, Tomlins S, Palmbos PL, Grivas
P, Day ML: “Molecular Correlates of In Vitro Responses to Dacomitinib and Afatinib
in Bladder Cancer.” Bladder Cancer, 2018 Jan 20;4(1):77-90, 2018, PMC5798519.
Tran Q, Kidwell KM, Tsodikov A: “A joint model of cancer incidence, metastasis, and
mortality” Lifetime Data Anal, 24(3):385-406, 2018, PMID 28871363.
Veenstra CM, Abrahamse P, Wagner TH, Hawley ST, Banerjee M, Morris AM: “Employment
benefits and job retention: evidence among patients with colorectal cancer.” Cancer
Med, 7(3):736-745, 2018, PMC5852372.
Viglianti BL, Wale DJ, Wong KK, Johnson TD, Ky C, Frey KA, Gross MD. “Effects of Tumor
Burden on Reference Tissue Standardized Uptake for PET Imaging.” Radiology, 2018,
PMID: 29558296.
Wages N and Braun T. “Accuracy, Safety, and Reliability of Novel Phase I Designs
– Letter”. Clinical Cancer Research (24): 5482-5482, 2018. PMID: 29661774.
Wahl DR, Kim MM, Aryal MP, Hartman H, Lawrence TS, Schipper MJ, Parmar HA, Cao Y:
“Combining Perfusion and High B-value Diffusion MRI to Inform Prognosis and Predict
Failure Patterns in Glioblastoma.” Int J Radiat Oncol Biol Phys 102(4): 757-764, 2018.
PM29980414.
Wang Q, Yan R, Pinnell N, McCarter A C, Oh Y, Liu Y, Sha C, Garber N. F, Chen Y, Wu
Q, Ku C J, Tran I, Serna Alarcon A, Kuick R, Engel J D, Maillard I, Cierpicki T, Chiang
M Y “Stage-specific roles for Zmiz1 in Notch-dependent steps of early T-cell development”
Blood Journal, 132(12(): 1279-1292. 2018 PMC6148450.
Wilson MJ, Sen A, Bridges D, Turgeon DK, Brenner DE, Smith WL, Ruffin MT 4th, Djuric
Z; “Higher baseline expression of the PTGS2 gene and greater decreases in total colonic
fatty acid content predict greater decreases in colonic prostaglandin-E2 concentrations
after dietary supplementation with ω-3 fatty acids”Prostaglandins Leukot Essent Fatty
Acids. 2018 Dec;139:14-19. doi: 10.1016/j.plefa.2018.11.001. Epub, 2018. PMID: 30471768
Zhang Y,Pitchiaya S, Cieślik M, Niknafs YS, Tien JC, Hosono Y, Iyer MK, Yazdani S,
Subramaniam S, Shukla SK, Jiang X, Wang L, Liu TY, Uhl M, Gawronski AR, Qiao Y1, Xiao
L, Dhanasekaran SM, Juckette KM, Kunju LP, Cao X, Patel U, Batish M, Shukla GC, Paulsen
MT, Ljungman M, Jiang H, Mehra R, Backofen R, Sahinalp CS, Freier SM, Watt AT, Guo
S, Wei JT, Feng FY, Malik R, Chinnaiyan AM: “Analysis of the androgen receptor-regulated
lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression.” Nat
Genet, 50(6):814-824, 2018, PMC5980762.
Zhao L, Wu W, Feng D, Jiang H, Nguyen X: “Bayesian Analysis of RNA-seq Data Using
a Family of Negative Binomial Models.” Bayesian Anal, 13(2)411-436, 2018.
