Papers

* Bolded names in publication citation indicate that the author is a member of the Center for Precision Health Data Science 

• Fritsche L, Beesley L, VandeHaar P, Peng R, Salvatore M, Zawistowski M, Gagliano S, Das S, LeFaive J, Kaleba E, Klumpner T, Moser S, Blanc V, Brummett C, Kheterpal S, Abecasis G, Gruber S, Mukherjee B. Exploring various polygenic risk scores for basal cell carcinoma, cutaneous squamous cell carcinoma and melanoma in the phenomes of the Michigan Genomics Initiative and the UK Biobank. bioRXiv. 2018. doi: 10.1101/384909

* Bolded names in publication citation indicate that the author is a member of the Center for Precision Health Data Science 

• Chen Z, Boehnke M, Wen X, Mukherjee B. Revisiting the genome-wide significance threshold for common variant GWAS. G3 Genes|Genomes|Genetics, jkaa056, https://doi.org/10.1093/g3journal/jkaa056, 2021.
  
  
• Yu Y, Zhang M, Shi X, Caram M.E.V, Little R. J. A, Mukherjee B. A comparison of parametric propensity score-based methods for causal inference with multiple treatments and a binary outcome. Statistics in Medicine,  https://doi.org/10.1002/sim.8862, 2020.

* Bolded names in publication citation indicate that the author is a member of the Center for Precision Health Data Science

• Abraham HG, Xia Y, Mukherjee B. Merajver SD. Incidence and survival of inflammatory breast cancer between 1973 and 2015 in the SEER database.  Breast Cancer Research Treatment. 2020, doi: 10.1007/s10549-020-05938-2. 
  
  
• Aker A, McConnell RER, Loch-Caruso R, Park SK, Mukherjee B, Rosario ZY, Velez- Vega, CM, Huerta- Montanez G, Alshawabkeh AN, Cordero JF, Meeker JD. Interactions Between Chemicals and Non-Chemical Stressors: The Modifying Effect of Life Events on the Association Between Triclocarban, Phenols and Parabens With Gestational Length in a Puerto Rican Cohort. The science of the total environment. 2020 Mar; 708, 134719. doi: 10.1016/j.scitotenv.2019.134719
  
  
• Ashrap P, Watkins DJ, Mukherjee B, Boss J, Richards MJ, Rosario Z, Vélez-Vega CM, Alshawabkeh A, Cordero JF, Meeker JD: Maternal blood metal and metalloid concentrations in association with birth outcomes in Northern Puerto Rico. Environmental International. 2020, 138:105606. doi:10.1016/j.envint.2020.105606
  
  
• Ashrap P, Watkins DJ, Mukherjee B, Boss J, Richards MJ, Rosario Z, Velez- Vega CM, Alshawabkeh A, Cordero JF, Meeker JD. Predictors of Urinary and Blood Metal(loid) Concentrations Among Pregnant Women in Northern Puerto Rico. Environmental research. 2020 Jan; 183, 109178. doi: 10.1016/j.envres.2020.109178
  
  
• Aung MT, Song Y, Ferguson KK, Cantonwine DE, Zeng L, McElrath TF, Pennathur S, Meeker JD, Mukherjee B. Application of an analytical framework for multivariate mediation analysis of environmental data. Nature Communications, 2020, Nov 11(1):5624, doi: 10.1038/s41467-020-19335-2.
  
  
• Beesley LJ, Fritsche LG, Mukherjee B. An analytic framework for exploring sampling and observation process biases in genome and phenome-wide association studies using electronic health records. Statistics in Medicine. 2020, 39(124):1965-1979, doi: 10.1002/sim.8524
  
  
• Beesley LJ, Mukherjee B. Statistical inference for association studies using electronic health records: handling both selection bias and outcome misclassification. Biometrics. 2020, 1-20, doi: 10.1111/biom.13400
  
  
• Beesley LJ, Salvatore M, Fritsche LG, Pandit A, Rao A, Brummett C, Willer CJ, Lisabeth LD, Mukherjee B. The Emerging Landscape of Health Research Based on Biobanks Linked to Electronic Health Records: Existing Resources, Statistical Challenges, and Potential Opportunities. Statistics in medicine. 2020 Mar; 39 (6), 773-800. doi: 10.1002/sim.8445
  
  
• Bi W, Fritsche LG, Mukherjee B, Kim S, Lee S. A Fast and Accurate Method for Genome-Wide Time-to-Event Data Analysis and Its Application to UK Biobank. American Journal of Human Genetics. 2020, 102(2):222-233. doi:10.1016/j.ajhg.2020.06.003
  
  
• Brown KM, Diez-Roux AV, Smith JA, Needham BL, Mukherjee B, Ware EB, Liu Y, Cole SW, Seeman TE, Kardia SLR. Social regulation of inflammation related gene expression in the multi-ethnic study of atherosclerosis. Psychoneuroendocrinology. 2020, 117:104654, doi: 10.1016/j.psyneuen.2020.104654
  
  
• Brieger KK, Peterson S, Lee AW, Mukherjee B, Bakulski KM, Alimujiang A, Anton-Culver H, Anglesio MS, Bandera EV, Berchuck A, Bowtell DDL, Chenevix-Trench G, Cho KR, Cramer DW, DeFazio A, Doherty JA, Fortner RT, Garsed DW, Gayther SA, Gentry-Maharaj A, Goode EL, Goodman MT, Harris HR, Høgdall E, Huntsman DG, Shen H, Jensen A, Johnatty SE, Jordan SJ, Kjaer SK, Kupryjanczyk J, Lambrechts D, McLean K, Menon U, Modugno F, Moysich K, Ness R, Ramus SJ, Richardson J, Risch H, Rossing MA, Trabert B, Wentzensen N, Ziogas A, Terry KL, Wu AH, Hanley GE, Pharoah P, Webb PM, Pike MC, Pearce CL; Ovarian Cancer Association Consortium. Menopausal hormone therapy prior to the diagnosis of ovarian cancer is associated with improved survival, Gynecologic Oncology, 2020 Sep; 158(3):702-709, 2020, doi: 10.1016/j.ygyno.2020.06.481
  
  
• Ding N, Harlow SD, Batterman S, Mukherjee B, Sung KP. Longitudinal Trends in Perfluoroalkyl and Polyfluoroalkyl Substances Among Multiethnic Midlife Women From 1999 to 2011: The Study of Women's Health Across the Nation. Environment international. 2020 Feb; 135, 105381. doi: 10.1016/j.envint.2019.105381
  
  
• Elliott MR, Zhao Z, Mukherjee B, Kanaya A, Needham BL. Methods to Account for Uncertainty in Latent Class Assignments When Using Latent Classes as Predictors in Regression Models, With Application to Acculturation Strategy Measures. Epidemiology, 2020 Mar; 31 (2), 194-204. doi: 10.1097/EDE.0000000000001139
  
  
• Filigrana P, Milando C, Batterman S, Lebvy JI, Mukherjee B, Adar S. Spatiotemporal variations in traffic activity and their influence on air pollution levels in communities near highways. Atmospheric Environment. 2020, 242:117758, doi: 10.1016/j.atmosenv.2020.117758
  
  
• Fritsche LG, Patil S, Beesley LJ, VandeHaar P, Salvatore M, Ma Y, Peng RB, Taliun D, Zhou X, Mukherjee B. Cancer PRSweb: An Online Repository with Polygenic Risk Scores for Major Cancer Traits and Their Evaluation in Two Independent Biobanks. 2020, The American Journal of Human Genetics. https://doi.org/10.1016/j.ajhg.2020.08.025
  
  
• Gu T, Mack JA, Salvatore M, Sankar SP, Valley TS, Singh K, Nallamothu, BK Kheterpal, S, Lisabeth, L, Fritsche LG, Mukherjee B. Characteristics Associated With Racial/Ethnic Disparities in COVID-19 Outcomes in an Academic Health Care System.  JAMA Network Open. 2020, 3(10):e2025197. doi: 10.1101/2020.06.16.20133140
  
  
• Hazzard VM, Miller AL, Bauer KW, Mukherjee B, Sonneville KR. Mother-Child and Father-Child Connectedness in Adolescence and Disordered Eating Symptoms in Young Adulthood. The journal of adolescent health: official publication of the Society for Adolescent Medicine. 2020 Mar; 66 (3), 366-371. doi: 10.1016/j.jadohealth.2019.09.019
  
  
• Kim SS, Meeker JD, Aung MT, Yu Y, Mukherjee B, Cantonwine DE, McElrath TF Ferguson KK, Urinary trace metals in association with fetal ultrasound measures during pregnancy. Environmental Epidemiology. 2020, (2).pii e075, doi: 10.1097/EE9.0000000000000075
  
  
• Lee AW, Rosenzweig S, Wiensch A, The Australian Ovarian Cancer Study Group, Ramus SJ, Menon U, Gentry-Maharjaj A, Ziogas A, Anton-Culver H, Whittemore A, Sieh W, Rothstein JH, McGuire V, Wentzensen N, Bandera EV, Qin B, Terry KL, Cramer DW, Titus L, Schildkraut JM, Berchuck A, Goode EL, Kjaer SK, Jensen A, Jordan SJ, Ness RB, Modugno F, Moysich K, Thompson PJ, Goodman MT, Carney ME, Chang-Claude J, Rossing MA, Harris HR, Doherty JA, Risch HA, Khoja L, Alimujiang A, Phung MT, Brieger K, Mukherjee B, Pharoah PD, Wu AH, Pike, MC, Webb PM, Pearce CL, Expanding our understanding of ovarian cancer risk the role of incomplete pregnancies. Journal of the National Cancer Institute. 2020, doi: 10.1093/jnci/djaa099
  
  
• Lee AW, Wu, AH, Wiensch A, Mukherjee B, Terry KL, Harris HR, Carney ME, Jensen A, Cramer DW, Berchuck A, Doherty JA, Modugno F, Goodman MT, Alimujiang A, Rossing MA, Cushing-Haugen KL, Bandera EV, Thompson PJ, Kjaer SK, Hogdall E, Webb PM, Huntsman DG, Moysich KB, Lurie G, Ness RB, Stram DO, Roman L, Pike MC, Pearce CL, Ovarian Cancer Association Consortium. Estrogen Plus Progestin Hormone Therapy and Ovarian Cancer A Complicated Relationship Explored Epidemiology. 2020 May; 31(3)402-408. doi: 10.1097/EDE.0000000000001175
  
  
• Okita Y, Koi M, Takeda K, Ross R, Mukherjee B, Koeppe E, Stoffel EM, Galanko JA, McCoy AN, Keku TO, Okugawa Y, Kitajima T, Toiyama Y, Martens E, Carethers J. Fusobacterium nucleatum infection correlates with two types of microsatellite alterations in colorectal cancer and triggers DNA damage. Gut Pathogens. 2020, 12:(46), eCollection. doi: 10.1186/s13099-020-00384-3
  
  
• Purkayastha S, Salvatore M, Mukherjee B. Are women leaders significantly better at controlling the contagion during the Covid-19 pandemic? Journal of Health and Social Sciences, 2020 jun; 5(2):231-240. https://journalhss.com/publications/2020-52/
  
  
• Ray D, Salvatore M, Bhattacharyya R, Wang L, Du J, Mohammed S, Purkayastha S, Halder A, Rix A, Barker D, Kleinsasser M, Zhou Y, Bose D, Song P, Banerjee M, Baladandayuthapani V, Ghosh P, Mukherjee B.  Predictions, Role of Interventions and Effects of a Historic National Lockdown in India’s Response to the COVID-19 Pandemic: Data Science Call to Arms, Harvard Data Science Review. 2020, Suppl1 doi: 99608f92.60e08ed5
  
  
• Ross RD, Shi X, Caram MEV, Tsao P, Lin P, Bohnert A, Zhang M, Mukherjee B. Veridical causal inference using propensity score methods for comparative effectiveness research with medical claims. Health Services and Outcomes Research Methodology. 2020, doi: 10.1007/s10742-020-00222-8
  
  
• Salerno S, Zhao Z, Sankar SP, Salvatore M, Gu T, Fritsche LG, Lisabeth LD, Valley TS, Mukherjee B. Patterns of repeated diagnostic testing for COVID19 in relation to patient characteristics and outcomes. Journal of Internal Medicine. 2020, doi.:10.1111/joim.13213
  
  
• Salvatore M, Beesley LJ, Fritsche LG, Hanauer D, Shi X, Mondul AM, Pearce CL, Mukherjee B. Phenotype risk scores (PheRS) for pancreatic cancer using time-stamped electronic health record data: Discovery and validation in two large biobanks. Journal of Biomedical Informatics. 2020, 113:103652, doi: 10.1016/j.jbi.2020.103652
  
  
• Song Y, Zhou X, Zhang M, Zhao W, Liu Y, Kardia SL, Diez-Roux AVR, Needham B, Smith J, Mukherjee B, Bayesian Shrinkage Estimation of High Dimensional Causal Mediation Effects in Omics Studies. Biometrics. 2020, 76(3):700-710, doi: 10.1111/biom.13189
  
  
• Wang X, Karvonen-Gutierrez CA, Herman WH, Mukherjee B, Harlow SD, Park SK.  Urinary metals and incident diabetes in midlife women: Study of Women’s Health Across the Nation (SWAN). BMJ Open Diabetes Research & Care. 2020, 8(1):e001233, doi: 10.1136/bmjdrc-2020-001233
  
  
• Wang X, Karvonen-Gutierrez CA, Mukherjee B, Herman WH, Park SK. Urinary metals and adipokines in midlife women: The Study of Women’s Health Across the nation (SWAN). Environmental Research. 2020, doi: 10.1016/j.envres.2020.110426
  
  
• Wang X, Mukherjee B, Karvonen-Gutierrez CA, Herman WH, Batterman S, Harlow SD, Park SK. Urinary metal mixtures and longitudinal changes in glucose homeostasis: The Study of Women's Health Across the Nation (SWAN). Environment International. 2020,  45:106109, doi: 10.1016/j.envint.2020.106109
  
  
• Zhang H, Mukherjee B, Arthur V, Hu G, Hochner H, Chen J. An Efficient and Computationally Robust Statistical Method for Analyzing Case-Control Mother-Offspring Pair Genetic Association Studies. Annals of Applied Statistics. 2020, 14(2):560-584, doi: 10.1214/19-aoas1298
  
  
• Zhang M, Yu Y, Wang S, Salvatore M, Fritsche L, He Z, Mukherjee B. Interaction analysis under misspecification of main effects: Some common mistakes and simple solutions. Statistics in Medicine. 2020 Jan [online ahead of print]. doi: 10.1002/sim.8505 

* Bolded names in publication citation indicate that the author is a member of the Center for Precision Health Data Science

• Alimujiang A, Wiensch A, Boss J, Fleischer NL, Mondul AM, McLean K, Mukherjee B, Pearce CL. Association Between Life Purpose and Mortality Among US Adults Older Than 50 Years. JAMA Netw Open. 2019, 2(5):e194270. doi: 10.1001/jamanetworkopen.2019.4270
  
  
• Aung MT, Meeker JD, Boss J, Bakulski K, Mukherjee B, Cantonwine D, McElrath T, Ferguson K. Manganese Is Associated With Increased Plasma interleukin-1β During Pregnancy, Within a Mixtures Analysis Framework of Urinary Trace Metals. Reproductive toxicology. 2019, 93, 43-53. doi: 10.1016/j.reprotox.2019.12.004
  
  
• Aung MT, Ferguson KK, Cantonwine DE, Bakulski KM, Mukherjee B, Loch-Caruso R, McElrath TF, Meeker JD. Associations between maternal plasma measurements of inflammatory markers and urinary levels of phenols and parabens during pregnancy: A repeated measures study. Sci Total Environ. 2019, 650(Pt 1):1131-1140. doi: 10.1016/j.scitotenv.2018.08.356.
  
  
• Aung MT, Yu Y, Ferguson KK, Cantonwine DE, Zeng L, McElrath TF, Pennathur S, Mukherjee B, Meeker JD. Prediction and Associations of Preterm Birth and Its Subtypes with Eicosanoid Enzymatic Pathways and Inflammatory Markers. Scientific reports. 2019,  9(1), 17049 doi:10.1038/s41598-019-53448-z
  
  
• Beesley L, Todd M, Spratt D, Singhal U, Feng F, Furgal A, Jackson W, Daignault S, Taylor J. Individual and population comparisons of surgery and radiotherapy outcomes in prostate cancer using Bayesian multistate models. JAMA Netw Open. 2019, doi:10.1001/jamanetworkopen.2018.7765
  
  
• Bi W, Zhao Z, Dey R, Fritsche LG, Mukherjee B, Lee S. A Fast and Accurate Method for Genome-wide Scale Phenome-wide G x E Analysis and Its Application to Uk Biobank. Americal journal of human genetics. 2019 Dec; 105 (6), 1182-1192 doi: 10.1016/j.ajhg.2019.10.008
  
  
• Boss J, Mukherjee B, Ferguson KK, Aker A, Alshawabkeh AN, Cordero JF, Meeker JD, Kim S. Estimating Outcome-Exposure Associations when Exposure Biomarker Detection Limits vary Across Batches. Epidemiology. 2019, 30(5):746-755.  doi: 10.1097/EDE.0000000000001052
  
  
• Brown DL, Shafie-Khorassani F, Kim S, Chervin RD, Case E, Morgenstern LB, Yadollahi A, Tower S, Lisabeth LD. Sleep-disordered breathing is associated with recurrent ischemic stroke. Stroke. 2019, Mar. doi: 10.1161/STROKEAHA.118.023807
  
  
• Brumpton BM, Fritsche LG, Zheng J, Nielsen JB, Mannila M, Surakka I, Rasheed H, Vie GÅ, Graham SE, Gabrielsen ME, Laugsand LE, Aukrust P, Vatten LJ, Damås JK, Ueland T, Janszky I, Zwart JA, Van't Hooft FM, Seidah NG, Hveem K, Willer C, Smith GD, Åsvold BO; INVENT Consortium. Variation in serum PCSK9 (proprotein convertase subtilisin/kexin type 9), cardiovascular disease risk, and an investigation of potential unanticipated effects of PCSK9 inhibition. Circ Genom Precis Med. 2019, doi: 10.1161/CIRCGEN.118.002335.
  
  
• Budu-Aggrey A, Brumpton B, Tyrrell J, Watkins S, Modalsli EH, Celis-Morales C, Ferguson LD, Vie GÅ, Palmer T, Fritsche LG, Løset M, Nielsen JB, Zhou W, Tsoi LC, Wood AR, Jones SE, Beaumont R, Saunes M, Romundstad PR, Siebert S, McInnes IB, Elder JT, Davey Smith G, Frayling TM, Åsvold BO, Brown SJ, Sattar N, Paternoster L. Evidence of a causal relationship between body mass index and psoriasis: A Mendelian randomization study. PLoS Med. 2019, doi: 10.1371/journal.pmed.1002739
  
  
• Caram MEV, Wang S, Tsao P, Griggs JJ, Miller DC, Hollenbeck BK, Lin P, Mukherjee B. Patient and Provider Variables Associated with Variation in the Systemic Treatment of Advanced Prostate Cancer. Urology Practice. 2019, 1;6(4):234-242. doi: 10.1097/UPJ.0000000000000020
  
  
• Caram MEV, Ross R, Lin P, Mukherjee B. Factors associated with use of sipuleucel-T to treat patients with advanced prostate cancer. JAMA Netw Open. 2019, doi: 10.1001/jamanetworkopen.2019.2589
  
  
• Chen H, Huffman JE, Brody JA, Wang C, Lee S, Li Z, Gogarten SM, Sofer T, Bielak LF, Bis JC, Blangero J, Bowler RP, Cade BE, Cho MH, Correa A, Curran JE, de Vries PS, Glahn DC, Guo X, Johnson AD, Kardia S, Kooperberg C, Lewis JP, Liu X, Mathias RA, Mitchell BD, O'Connell JR, Peyser PA, Post WS, Reiner AP, Rich SS, Rotter JI, Silverman EK, Smith JA, Vasan RS, Wilson JG, Yanek LR; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; TOPMed Hematology and Hemostasis Working Group, Redline S, Smith NL, Boerwinkle E, Borecki IB, Cupples LA, Laurie CC, Morrison AC, Rice KM, Lin X. Efficient variant set mixed model association tests for continuous and binary traits in large-scale whole-genome sequencing studies. Am J Hum Genet. 2019,  doi: 10.1016/j.ajhg.2018.12.012
  
  
• Chen YH, Mukherjee B, Berrocal VJ. Distributed lag interaction models with two pollutants. J R Stat Soc Ser C Appl Stat. 2019, 68(1): 79-97, doi: 10.1111/rssc.12297
  
  
• Dey R, Nielsen JB, Fritsche LG, Zhou W, Zhu H, Willer CJ, Lee S. Robust meta-analysis of biobank-based genome-wide association studies with unbalanced binary phenotypes. Genet Epidemiol. 2019, doi: 10.1002/gepi.22197
  
  
• Dutta D, Scott L, Boehnke M, Lee S. Multi-SKAT: general framework to test for rare-variant association with multiple phenotypes. Genet Epidemiol. 2019, doi: 10.1002/gepi.22156
  
  
• Ferguson KK, Lan Z, Yu Y, Mukherjee B, McElrath TF, Meeker JD. Urinary concentrations of phenols in association with biomarkers of oxidative stress in pregnancy: Assessment of effects independent of phthalates. Environment International. 2019, 131:104903.  doi: 10.1016/j.envint.2019.104903
  
  
• Fritsche LG, Beesley LJ, VandeHaar P, Peng RB, Salvatore M, Zawistowski M, Gagliano Taliun SA, Das S, LeFaive J, Kaleba EO, Klumpner TT, Moser SE, Blanc VM, Brummett CM, Kheterpal S, Abecasis GR, Gruber SB, Mukherjee B. Exploring various polygenic risk scores for skin cancer in the phenomes of the Michigan genomics initiative and the UK Biobank with a visual catalog: PRSWeb. PLoS Genet. 2019, 15(6):e1008202. doi: 10.1371/journal.pgen.1008202
  
  
• Goutman SA, Boss J, Patterson A, Mukherjee B, Batterman S, Feldman EL. High plasma concentrations of organic pollutants negatively impact survival in amyotrophic lateral sclerosis. J Neurol Neurosurg Psychiatry. 2019, doi: 10.1136/jnnp-2018-319785
  
  
• Hazzard VM, Miller AL, Bauer KW, Mukherjee B, Sonneville KR. Mother-Child and Father-Child Connectedness in Adolescence and Disordered Eating Symptoms in Young Adulthood. The Journal of adolescent health: official publication of the society for Adolescent Medicine. 2019 Nov; 66 (3), 366-371. doi:10.1016/j.jadohealth.2019.09.019
  
  
• Hazzard VM, Bauer KW, Mukherjee B, Miller AL, Sonneville KR. Associations between childhood maltreatment latent classes and eating disorder symptoms in a nationally representative sample of young adults in United States. Child abuse & neglect. 2019, 20:98:104171. doi10.106/j.chiabu.2019.104171
  
  
• Laskaris Z, Milando C, Batterman S, Mukherjee B, Basu N, O'neill MS, Robins TG, Fobil JN. Derivation of Time-Activity Data Using Wearable Cameras and Measures of Personal Inhalation Exposure among Workers at an Informal Electronic-Waste Recovery Site in Ghana. Annals of work exposures and health. 2019, doi: 10.1093/annweh/wxz056
  
  
• Liu M, Jiang Y, Wedow R, Li Y, Brazel DM, Chen F, Datta G, Davila-Velderrain J, McGuire D, Tian C, Zhan X; 23andMe Research Team; HUNT All-In Psychiatry, Choquet H, Docherty AR, Faul JD, Foerster JR, Fritsche LG, Gabrielsen ME, Gordon SD, Haessler J, Hottenga JJ, Huang H, Jang SK, Jansen PR, Ling Y, Mägi R, Matoba N, McMahon G, Mulas A, Orrù V, Palviainen T, Pandit A, Reginsson GW, Skogholt AH, Smith JA, Taylor AE, Turman C, Willemsen G, Young H, Young KA, Zajac GJM, Zhao W, Zhou W, Bjornsdottir G, Boardman JD, Boehnke M, Boomsma DI, Chen C, Cucca F, Davies GE, Eaton CB, Ehringer MA, Esko T, Fiorillo E, Gillespie NA, Gudbjartsson DF, Haller T, Harris KM, Heath AC, Hewitt JK, Hickie IB, Hokanson JE, Hopfer CJ, Hunter DJ, Iacono WG, Johnson EO, Kamatani Y, Kardia SLR, Keller MC, Kellis M, Kooperberg C, Kraft P, Krauter KS, Laakso M, Lind PA, Loukola A, Lutz SM, Madden PAF, Martin NG, McGue M, McQueen MB, Medland SE, Metspalu A, Mohlke KL, Nielsen JB, Okada Y, Peters U, Polderman TJC, Posthuma D, Reiner AP, Rice JP, Rimm E, Rose RJ, Runarsdottir V, Stallings MC, Stančáková A, Stefansson H, Thai KK, Tindle HA, Tyrfingsson T, Wall TL, Weir DR, Weisner C, Whitfield JB, Winsvold BS, Yin J, Zuccolo L, Bierut LJ, Hveem K, Lee JJ, Munafò MR, Saccone NL, Willer CJ, Cornelis MC, David SP, Hinds DA, Jorgenson E, Kaprio J, Stitzel JA, Stefansson K, Thorgeirsson TE, Abecasis G, Liu DJ, Vrieze S. Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use. Nat Genet. 2019, doi: 10.1038/s41588-018-0307-5
  
  
• Liu J, Zhao W, Ammous F, Turner ST, Mosley TH, Zhou X, Smith JA. Longitudinal analysis of epigenome-wide DNA methylation reveals novel smoking-related loci in African-Americans. Epigenetics. 2019, doi: 10.1080/15592294.2019.1581589
  
  
• Mohan DR, Lerario AM, Else T, Mukherjee B, Almeida MQ, Vinco M, Rege J, Mariani BMP, Zerbini MCN, Mendonca BB, Latronico AC, Marie SKN, Rainer WE, Giordano TJ, Fragoso MCBV, Hammer GD. Targeted assessment of G0S2 methylation identifies a rapidly recurrent, routinely fatal molecular subtype of adrenocortical carcinoma. Clin Cancer Res. 2019, doi: 10.1158/1078-0432.CCR-18-2693
  
  
• Park SK, Peng Q, Ding N, Mukherjee B, Harlow SD. Determinants of per- and polyfluoroalkyl substances (PFAS) in midlife women: Evidence of racial/ethnic and geographic differences in PFAS exposure. Environ Res. 2019, 175:186-199. doi: 10.1016/j.envres.2019.05.028
  
  
• Ratnapriya R, Sosina OA, Starostik MR, Kwicklis M, Kapphahn RJ, Fritsche LG, Walton A, Arvanitis M, Gieser L, Pietraszkiewicz A, Montezuma SR, Chew EY, Battle A, Abecasis GR, Ferrington DA, Chatterjee N, Swaroop A. Retinal transcriptome and eQTL analyses identify genes associated with age-related macular degeneration. Nat Genet. 2019, doi: 10.1038/s41588-019-0351-9
  
  
• Sun S, Zhu J, Mozaffari S, Ober C, Chen M, Zhou X. Heritability estimation and differential analysis of count data with generalized linear mixed models in genomic sequencing studies. Bioinformatics. 2019, 35(3):487-496. doi: 10.1093/bioinformatics/bty644
  
  
• Thompson MP, Pagani FD, Liang Q, Franko L, Zhang M, McCullough JS, Strobel RJ, Aaronson KD, Kormos RL, Likosky DS, for the Michigan Congestive Heart Failure Investigators. Center variation in medicare spending for durable left ventricular assist device implant hospitalizations. JAMA Cardiol. 2019, 4(2):153-160. doi: 10.1001/jamacardio.2018.4717
  
  
• Wang X, Mukherjee B, Batterman S, Harlow SD, Park SK. Urinary Metals and Metal Mixtures in Midlife Women: The Study of Women's Health Across the Nation (SWAN). International journal of hygiene and environmental health. 2019 Jun (5), 778-789. doi: 10.1016/j.ijheh.2019.05.002
  
  
• Wang X, Mukherjee B, Park SK. Does Information on Blood Heavy Metals Improve Cardiovascular Mortality Prediction? Journal of the American Heart Association. 2019 Nov 5; 8 (21):e013571. doi:10.1161/JAHA.119.013571
  
  
• Yu Y, Xia L, Lee S, Zhou X, Stringham HM, Boehnke M, Mukherjee B. Subset-Based Analysis Using Gene-Environment Interactions for Discovery of Genetic Associations across Multiple Studies or Phenotypes. Hum Hered. 2019 May 27:1-32. doi: 10.1159/000496867.
  
  
• Zeng P, Zhou X. Causal effects of blood lipids on amyotrophic lateral sclerosis: a Mendelian randomization study. Hum Mol Genet. 2019, Feb 15. doi:10.1093/hmg/ddy384.

* Bolded names in publication citation indicate that the author is a member of the Center for Precision Health Data Science

• Narisetty NN, Mukherjee B, Chen YH, Gonzalez R, Meeker JD. Selection of nonlinear interactions by a forward stepwise algorithm: Application to identifying environmental chemical mixtures affecting health outcomes. Stat Med. 2018, Dec 26. doi: 10.1002/sim.8059.

• Wang X, Mukherjee B, Park SK. Associations of cumulative exposure to heavy metal mixtures with obesity and its comorbidities among U.S. adults in NHANES 2003-2014. Environ Int. 2018 Oct 10;121(Pt 1):683-694. doi: 10.1016/j.envint.2018.09.035.

• Wang W, Moroi S, Bakulski KM, Mukherjee B, Weisskopf MG, Schaumberg D, Sparrow D, Vokonas PS, Hu H, Park SK. Bone Lead Levels and Risk of Incident Primary Open-Angle Glaucoma: The VA Normative Aging Study. Environmental Health Perspective, 2018 Aug 8;126(8):087002. doi: 10.1289/EHP3442.

• Nielsen JB, Thorolfsdottir RB, Fritsche LG, Zhou W, Skov MW, Graham SE, Herron TJ, McCarthy S, Schmidt EM, Sveinbjornsson G, Surakka I, Mathis MR, Yamazaki M, Crawford RD, Gabrielsen ME, Skogholt AH, Holmen OL, Lin M, Wolford BN, Dey R, Dalen H, Sulem P, Chung JH, Backman JD, Arnar DO, Thorsteinsdottir U, Baras A, O'Dushlaine C, Holst AG, Wen X, Hornsby W, Dewey FE, Boehnke M, Kheterpal S, Mukherjee B, Lee S, Kang HM, Holm H, Kitzman J, Shavit JA, Jalife J, Brummett CM, Teslovich TM, Carey DJ, Gudbjartsson DF, Stefansson K, Abecasis GR, Hveem K, Willer CJ. Biobank- driven genomic discovery yields new insight into atrial fibrillation biology. Nat Genet. 2018 Jul 30. doi: 10.1038/s41588-018-0171-3, [Epub ahead of print], PMID: 30061737.

• Cheng W, Taylor JMG, Gu T, Tomlins S and Mukherjee B, Informing a Risk Prediction Model for Binary Outcomes with External Coefficient Information. JRSS, Series C, 2018. doi.org/10.1111/rssc.12306.

• Chen Y-H, Mukherjee B and Berrocal V, Distributed lag interaction models for two pollutants. JRSS, Series C. 2018. doi.org/10.1111/rssc.12297.

• Wagner AL, Xia L, Ghosh A, Pandey P, Datta S, Chattopadhyay S, Mazumder T, Santra S, Nandi U, Pal J, Joshi S, Mukherjee B. Using community health workers to refer pregnant women and young children to health care facilities in rural West Bengal, India: a prospective cohort study, PloS ONE, 13(6):e0199607, 2018, PMCID: PMC6013192.

• Ferguson KK, Yu Y, Cantonwine DE, McElrath TF, Meeker JD, Mukherjee B, Fetal ultrasound measurement imputations based on growth curves versus multiple imputation chained equation (MICE). Paediatric and Perinatal Epidemiology, 2018 Jul 17. doi: 10.1111/ppe.12486, [Epub ahead of print], PMID: 30016545.

• Ferguson KK, Kamai EM, Cantonwine DE, Mukherjee B, Meeker JD, McElrath TF, Associations between repeated ultrasound measures of fetal growth and biomarkers of maternal oxidative stress and inflammation in pregnancy. American Journal of Reproductive Immunology, 2018 Jul 8: e13017. doi: 10.1111/aji.13017. [Epub ahead of print], PMID: 29984454.

• Roberts B, Cheng W, Mukherjee B, Neitzel RL. Imputation of missing values in a large job exposure matrix using hierarchical information. J Expo Sci Environ Epidemiol, 2018 May 23. doi: 10.1038/s41370-018-0037-x, [Epub ahead of print], PMID: 29789667.

• Schmit SL, Edlund CK, Schumacher FR, Gong J, Harrison TA, Huyghe JR, Qu C, Melas M, Van Den Berg DJ, Wang H, Tring S, Plummer SJ, Albanes D, Alonso MH, Amos CI, Anton K, Aragaki AK, Arndt V, Barry EL, Berndt SI, Bezieau S, Bien S, Bloomer A, Boehm J, Boutron-Ruault MC, Brenner H, Brezina S, Buchanan DD, Butterbach K, Caan BJ, Campbell PT, Carlson CS, Castelao JE, Chan AT, Chang-Claude J, Chanock SJ, Cheng I, Cheng YW, Chin LS, Church JM, Church T, Coetzee GA, Cotterchio M, Cruz Correa M, Curtis KR, Duggan D, Easton DF, English D, Feskens EJM, Fischer R, FitzGerald LM, Fortini BK, Fritsche LG, Fuchs CS, Gago-Dominguez M, Gala M, Gallinger SJ, Gauderman WJ, Giles GG, Giovannucci EL, Gogarten SM, Gonzalez-Villalpando C, Gonzalez-Villalpando EM, Grady WM, Greenson JK, Gsur A, Gunter M, Haiman CA, Hampe J, Harlid S, Harju JF, Hayes RB, Hofer P, Hoffmeister M, Hopper JL, Huang SC, Huerta JM, Hudson TJ, Hunter DJ, Idos GE, Iwasaki M, Jackson RD, Jacobs EJ, Jee SH, Jenkins MA, Jia WH, Jiao S, Joshi AD, Kolonel LN, Kono S, Kooperberg C, Krogh V, Kuehn T, Küry S, LaCroix A, Laurie CA, Lejbkowicz F, Lemire M, Lenz HJ, Levine D, Li CI, Li L, Lieb W, Lin Y, Lindor NM, Liu YR, Loupakis F, Lu Y, Luh F, Ma J, Mancao C, Manion FJ, Markowitz SD, Martin V, Matsuda K, Matsuo K, McDonnell KJ, McNeil CE, Milne R, Molina AJ, Mukherjee B, Murphy N, Newcomb PA, Offit K, Omichessan H, Palli D, Cotoré JPP, Pérez-Mayoral J, Pharoah PD, Potter JD, Qu C, Raskin L, Rennert G, Rennert HS, Riggs BM, Schafmayer C, Schoen RE, Sellers TA, Seminara D, Severi G, Shi W, Shibata D, Shu XO, Siegel EM, Slattery ML, Southey M, Stadler ZK, Stern MC, Stintzing S, Taverna D, Thibodeau SN, Thomas DC, Trichopoulou A, Tsugane S, Ulrich CM, van Duijnhoven FJB, van Guelpan B, Vijai J, Virtamo J, Weinstein SJ, White E, Win AK, Wolk A, Woods M, Wu AH, Wu K, Xiang YB, Yen Y, Zanke BW, Zeng YX, Zhang B, Zubair N, Kweon SS, Figueiredo JC, Zheng W, Marchand LL, Lindblom A, Moreno V, Peters U, Casey G, Hsu L, Conti DV, Gruber SB. Novel Common Genetic Susceptibility Loci for Colorectal Cancer. J Natl Cancer Inst. 2018 Jun 16. doi: 10.1093/jnci/djy099, [Epub ahead of print], PMID: 29917119.

• Boss JA, Zhai J, MS, Aung MT, Ferguson KK, Johns, LE; McElrath, TF, Meeker, JD, Mukherjee, B. Associations between mixtures of urinary phthalate metabolites with gestational age at delivery: a time to event analysis using summative phthalate risk scores. Environmental Health, 17(1):56, 17(1):56, 2018, PMCID: PMC6011420.

• Estes JP, Mukherjee B, Taylor JMG, Empirical Bayes Estimation and Prediction Using Summary-Level Information From External Big Data Sources Adjusting for Violations of Transportability. Statistics in Biosciences, 1-19, 2018. doi.org/10.1007/s12561-018-9217-4.

• Fritsche L, Gruber SB, Wu Z, Schmidt EM, Zawistowski M, Moser SE, Blanc V, Brummet C, Kheterpal S, Abecasis GA, Mukherjee B. Association of Polygenic Risk Scores for Multiple Cancers in a Phenomewide Study: Results from The Michigan Genomics Initiative, The American Journal of Human Genetics, 102:1048-1061, 2018, PMCID: PMC5992124.

• Caram MEV, Estes JP, Griggs JJ, Lin P, Mukherjee B. Temporal and geographic variation in the systemic treatment of advanced prostate cancer. BMC Cancer, 18(1):258, 2018, PMCID: PMC5840834.
• Wagner AL, Xia L, Pandey P, Datta S, Chattopadhyay S, Mazumder T, Sujay Santra S, Nandi U, Pal J, Joshi S, Mukherjee B. Risk factors during pregnancy and early childhood in rural West Bengal, India: A feasibility study implemented via trained community health workers using mobile data collection devices. Maternal and Child Health, 2018, doi: 10.1007/s10995-018-2509-y. [Epub ahead of print], PMID: 29500782.

• Cheng W, Taylor JMG, Vokonas P, Park SK, Mukherjee B. Improving estimation and prediction in linear regression incorporating external information from an established reduced model. Statistics in Medicine, 37(9):1515-1530, 2018, PMCID: PMC5889759.

• Roberts B, Seixas N, Mukherjee B, Neitzel, RL, Evaluating the Risk of Noise-Induced Hearing Loss Using Different Noise Measurement Criteria. To appear in Annals of Work Exposure and Health, 62(3):295-306, 2018, PMID 29415217.

• Aker AM, Johns L McElrath TF, Cantonwine DE, Mukherjee B, Meeker JD. Associations between maternal phenol and paraben urinary biomarkers and maternal hormones during pregnancy: A repeated measures study. Environment International, 113:341-34, 2018, PMCID: PMC5866216.

• Liu G, Lee S, Lee A, Others, Pearce CL, Mukherjee B. Robust tests for additive gene-environment interaction in case-control studies using gene-environment independence. The American Journal of Epidemiology, 187(2):366-377, 2018, PMCID: PMC5860584.

• Waldrop G, Zhong J, Peters M, Goud,A, Chen YH, Davis SN, Mukherjee B, Rajagopalan S. Incretin-based Therapy in Type 2 Diabetes: An Evidence-Based Systematic Review and Meta-analysis. Journal of Diabetes and its Complications, 32(1):113-122, 2018, PMID: 29074120.

• Ferguson, KK, Meeker, JD, Cantonwine, DE, Mukherjee B, Pace, GG, Weller, D McElrath, TF, Environmental phenol associations with ultrasound and delivery measures of fetal growth. Environment International, 112:243-250, 2018, PMCID: PMC5899051.

• Cheng W, Roberts B, Mukherjee B, Neitzel RL. Meta-Analysis of Job Exposure Matrix Data from Multiple Sources. Journal of Exposure Science and Environmental Epidemiology, 28(3):259-274, 2018, PMID: 28975928.

* Bolded names in publication citation indicate that the author is a member of the Center for Precision Health Data Science

• Chen Y-H, Mukherjee B, Adar S, Berrocal V, Coull BA, Robust Distributed Lag Models using Data Adaptive Shrinkage. Biostatistics, 2017, [Epub ahead of print], PMID: 29040386.

• Johns LE, Ferguson KK, Cantonwine DE, Mukherjee B, Meeker JD, McElrath TF. Subclinical Changes in Maternal Thyroid Function Parameters in Pregnancy and Fetal Growth. J Clin Endocrinol Metab. 2017, doi: 10.1210/jc.2017-01698, [Epub ahead of print], PMID: 29293986.

• Huang Z, Zhang H, Boss J, Goutman SA, Mukherjee B, Dinov ID, Guan Y, for the Pooled Resource Open-Access ALS Clinical Trials Consortium, Complete hazard ranking to analyze right-censored data: an ALS survival study. PLoS Computational Biology, 13(12):e1005887, 2017, PMCID: PMC5749893.

• Park SK, Zhao Z, Mukherjee B. Construction of environmental risk score beyond standard linear models using machine learning methods: application to metal mixtures, oxidative stress and cardiovascular disease in NHANES. Environmental Health. 16(1):102, 2017, PMCID: PMC5615812.
• He Z, Lee S, Zhang M, Smith JA, Guo X, Palmas W, Kardia SLR, Ionita-Laza I, Mukherjee B. Rare-variant association tests in longitudinal studies, with an application to the Multi-Ethnic Study of Atherosclerosis (MESA). Genetic Epidemiology, 41(8):801-810, 2017, PMCID: PMC5696115.

• McAllister K, Mechanic LE, Amos C, Aschard H, Blair IA, Chatterjee N, Conti D, Gauderman WJ, Hsu L, Hutter CM, Jankowska MM, Kerr J, Kraft P, Montgomery SB, Mukherjee B, Papanicolaou G, Patel CJ, Ritchie MD, Ritz BR, Thomas DC, Wei P, Witte JS on behalf of GxE meeting participants, Current Challenges and New Opportunities for Gene-Environment Interaction Studies of Complex Diseases. American Journal of Epidemiology. 186(7):753-761, 2017, PMID: 28978193.

• Needham BL, Mukherjee B, Bagchi P, Kim C, Mukherjea A, Kandula NR, Kanaya AM. Acculturation Strategies and Symptoms of Depression: The Mediators of Atherosclerosis in South Asians Living in America (MASALA) Study. J Immigr Minor Health, 1-7, 2017, PMCID: PMC5785586.

• Estes JP, Rice JD, Li S, Stringham HM, Boehnke M and Mukherjee B, Meta-Analysis of Gene-Environment Interaction Exploiting Gene-Environment Independence Across Multiple Studies. Statistics in Medicine. 36(24):3895-3909, 2017, PMCID: PMC5624850.

• Smith JA, Zhao W, Wang, X, Ratliff SM, Mukherjee B, Kardia SL, Liu C, Diez Roux AV, Needham BL. Neighborhood characteristics influence DNA methylation of genes involved in stress response and inflammation: The Multi-Ethnic Study of Atherosclerosis. Epigenetics, 12(8):662-373, 2017, PMCID: PMC5687339.

• Amos CI, Kerr J, Mukherjee B, Ritz, Mechanic, LE, Thomas, DC, Blair, Madan, J, Fallin, Ladd-Acosta, C, Patel, CP, McAllister, KA, Teiltelbaum, SL, Karagas, MR, Chatterjee, N and Jankowska M. Opportunities and Challenges for Environmental Exposure Assessment in Population-Based Studies. Cancer Epidemiology, Biomarkers and Prevention. 26(9):1370-1380, 2017, PMCID: PMC5581729.

• Johns LE, Ferguson KK, McElrath TF, Mukherjee B, Seely EW, Meeker JD. Urinary BPA and phthalate metabolite concentrations and plasma vitamin D levels in pregnant women: A repeated measures analysis. Environmental Health Perspective. 125(8):087026, 2017, PMCID: PMC5783673.
• Sun Z, Mukherjee B, Estes JP, Vokonas P and Park SK, Exposure enriched outcome-dependent sampling designs for longitudinal studies of gene-environment interaction. Statistics in Medicine, 36(18):2947-2960, 2017, PMCID: PMC5523112.

• Gauderman WJ, Mukherjee B, Aschard H, Hsu L, Lewinger JP, Patel C , Witte JS, Amos C, Tai C, Conti D, Torgerson D, Lee S, Chatterjee N. Update on the State of the Science for Analytical Methods for Gene-Environment Interactions. The American Journal of Epidemiology. 186(7):762-770, 2017, PMCID: PMC5859988.
• Caram MEV, Borza T, Min H-S, Griggs JJ, Miller DC, Hollenbeck BK, Mukherjee B, Skolarus TA. Early national dissemination of abiraterone and enzalutamide for advanced prostate cancer in Medicare Part D. The Journal of Oncology Practice. 13(8):e694-e702, 2017, PMCID: PMC5555032.

• Chen Y-H and Mukherjee, B. A new variance component score test for testing distributed lag functions with applications in time series analysis. Statistics and Probability Letters, 123: 122-127, 2017, PMCID: PMC5703603.

• He Z, Zhang M, Lee S, Smith JA, Kardia SLR, Diez Roux AVD, Mukherjee B, Set-Based Tests for Gene-Environment Interaction in Longitudinal Studies. The Journal of the American Statistical Association, Application and Case Studies, 112(519):966-978, 2017. doi.org/10.1080/01621459.2016.1252266.

• Ferguson KK, Meeker JD, McElrath TF, Mukherjee B, Cantonwine DE. Repeated measures of inflammation and oxidative stress biomarkers in preeclamptic and normotensive pregnancies. American Journal of Obstetrics and Gynecology, 216(5):527.e1-527.e9, 2017, PMCID: PMC5420472.

• Wagner AL, Boulton ML, Sun X, Mukherjee B, Huang Z, Harmsen IA, Ren J, Zikmund-Fisher BJ. Perceptions of measles, pneumonia, and meningitis vaccines among caregivers in Shanghai, China, and the health belief model: a cross-sectional study. BMC Pediatrics. 12:17(1):143, 2017, PMCID: PMC5468991.

• Aung MT, Johns LE, Ferguson KK, Mukherjee B, McElrath TF, Meeker JD. Thyroid hormone parameters during pregnancy in relation to urinary bisphenol A concentrations: A repeated measures study. Environ Int, 104:33-40, 2017, PMCID: PMC5497503.

• Johns LE, Ferguson KK, McElrath TF, Mukherjee B, Seely EW, Meeker JD. Longitudinal profiles of thyroid hormone parameters in pregnancy and associations with preterm birth. PloS ONE. 12(1):e0169542, 2017, PMCID: PMC5217954.

• Ferguson KK, Chen Y-H, VanderWeele TJ, McElrath TF, Meeker JD, Mukherjee B. Mediation of the relationship between maternal phthalate exposure and preterm birth by oxidative stress with repeated measurements across pregnancy. Environmental Health Perspective, 125(3): 488-494, 2017, PMCID: PMC5332184.

• Needham, BL, Mukherjee B, Bagchi P, Kim C, Mukherjea A, Kandula NR, Kanaya A. Acculturation Strategies among South Asian Immigrants: The Mediators of Atherosclerosis in South Asians Living in America (MASALA) Study. Journal of Immigrant and Minority Health. 19(2): 373-380, 2017, PMCID: PMC5003760.